Coffea arabica (coffee): 113726289
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Entry
113726289 CDS
T11342
Name
(RefSeq) diaminopimelate decarboxylase 1, chloroplastic-like
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00300
Lysine biosynthesis
carb00470
D-Amino acid metabolism
carb01100
Metabolic pathways
carb01110
Biosynthesis of secondary metabolites
carb01230
Biosynthesis of amino acids
Module
carb_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
113726289
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
113726289
Enzymes [BR:
carb01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
113726289
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-GeneID:
113726289
NCBI-ProteinID:
XP_027105723
UniProt:
A0A6P6VRS2
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All DBs
Position
2c:16234183..16238948
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AA seq
482 aa
AA seq
DB search
MATAAHSHLVSHTPSSLCKSLRYPPNLFSLKSILAIKPTSRTFSLRALLSTTASEPETQK
FQHCFTKSDDGFLYCEGLRVQDVVDFVERRPFYLYSKPQITRNVEAYKDALEGLSSIIGY
AIKANNNLKILEHLRHLGCGAVLVSGNELKLALHAGFDPTKCIFNGNGKLLEDLVLAAEA
GVFVNVDSEFDLENIVAAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL
QWFLDAVKSHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIRAQGFQIDYLNIG
GGLGIDYHHTGAILPAPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNRVTGVKTN
GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPSDAEVSTFDVVGPVCESADFLGKDRK
LPTPSRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSVSKIRHAETFEDHLKFFK
DL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgctgcacactcccacctcgtctcccacactccatcatccctttgcaaatcc
ttaaggtaccctccgaacctcttctcccttaaatccattttagccatcaagcccacctca
agaaccttcagcctgagagcacttctgtcaacaaccgcctcagagccagaaacccagaag
tttcagcactgctttacaaaatccgatgatgggtttttgtactgcgagggccttagggtt
caagatgtcgtggattttgtagaaagacgacccttttatctgtatagtaaaccccaaatt
actcgaaatgttgaggcttataaggatgctttagagggattgagttcgattattggctat
gcgattaaggctaataacaatctcaagattttggagcatctgaggcacttgggttgtggg
gcggttttggttagcggaaatgagctcaagttagctctccatgctggctttgatcccacg
aagtgcatctttaatggaaatggcaagctgttggaggatctagtactagctgctgaagca
ggtgtctttgtaaatgttgatagtgaatttgatttagaaaatattgttgcagccgcaagg
attgctgggaagaaggtcaatgtgctattgcgtattaatcccgatgtcgatccacaggtc
catccttatgttgctactggaaacaaaaactcaaaatttggtatcaggaatgagaagctg
caatggtttctagatgctgtaaagtctcatcctaatgaactaaagcttgttggggcccat
tgccatcttggttctaccattactaaggtagacattttcagagatgcggcagtcttaatg
gttaactacattgacgagattcgagcccaaggatttcaaattgattacctaaacattgga
ggtggtttgggaattgattaccatcatacaggggctatccttcccgcacctagagatctt
attgacactgttcgagagttggtgctttcacgaaacctcaatctcatcattgaacctggc
agatcacttatcgcaaatacttgttgcttggttaatcgcgttactggagtcaaaactaat
gggacgaaaaatttcattgtaattgatggcagcatggcagaacttatccgtcctagtctg
tatgatgcttatcaacacatagagttggtttctcctccgccaagcgatgctgaggtttcc
acctttgatgttgtgggtcctgtctgtgagtctgctgatttcttgggaaaggataggaaa
cttccaaccccttcaaggggtgccggcttggtagttcatgatgcaggtgcttactgcatg
agtatggcatcaacatacaatctcaagatgcgccctccagaatactgggttgaagatgat
ggctcagtatccaaaatcaggcacgcggagacatttgaagaccatttgaaatttttcaag
gatctttga
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