KEGG   Coffea arabica (coffee): 113726762
Entry
113726762         CDS       T11342                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03082  ATP-dependent chromatin remodeling
carb03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    113726762
   03083 Polycomb repressive complex
    113726762
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:carb03036]
    113726762
Enzymes [BR:carb01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     113726762
Chromosome and associated proteins [BR:carb03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     113726762
   HDAC complexes
    Sin3A-HDAC complex
     113726762
    BRAF-HDAC complex
     113726762
    REST complex
     113726762
    SHIP complex
     113726762
    MiDAC complex
     113726762
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     113726762
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    113726762
  Chromatin remodeling factors
   NuRD complex
    113726762
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 113726762
NCBI-ProteinID: XP_027106435
UniProt: A0A6P6VV57
LinkDB
Position
1c:complement(50980005..50985837)
AA seq 430 aa
MRSKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLAYQLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPSTEHLFPNELAKYNLGEDCPVFENLFEFCQIYAGGTIDAAHRL
NNELCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTNRVMTVSFHKYGDMFFPGTGDVKEIGEREGKFYAINVPLKDGIDDNSFTRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLITGGGGY
TKENVARCWAFETGVLLDTELPNEIPENDYIKFFEPDYSLKIPGGHIENLNSKSYLGTIK
MNVLENLRYIQHAPGVQMQEVPPDFYLPDFDEDEQNPDERMDQHTQDKQIQRDDEYYDGD
NDNDHNMEDM
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgctccaaggacagaatctcctacttttatgacggggatgtgggaaacgtatacttt
gggccgaaccatccgatgaagccgcatcgcttatgtatgacccatcatttagttctcgcc
tatcaactccacaagaagatggaaatttataggccgcacaaagcgtatcctgtggagcta
gcgcagtttcattcggctgattatgtggagtttctgcataggattactcccagcactgag
catttgttccctaatgaattggcgaagtataatctcggcgaagattgccctgtgttcgaa
aacttgtttgagttttgccaaatttatgctggaggaacaatagatgcagcacacagattg
aataatgagctttgtgacattgccataaactgggctggtggattgcaccatgccaagaag
tgtgaggcatctggattttgttacattaatgatctagttcttggaatcttggagcttctt
aagcatcatgccagagtgctgtacattgatattgatgtgcatcatggggatggtgtagaa
gaggccttttacttcactaatagggttatgactgttagtttccacaagtatggcgatatg
ttttttcctggaactggtgatgtcaaggaaattggagaaagagaaggaaaattttatgcc
atcaatgtccctctcaaggatggaatagatgataacagctttactcgactcttcaaaacc
attatttcgaaggttgttgaaacatacttacctggggcaattgttctccaatgtggggca
gattctctcgcaggggatcgtttgggctgcttcaacctttctatagatgggcatgctgaa
tgcgttcgctttgtgaagaaattcaatttgccccttctgataactgggggtggaggatac
accaaagagaatgttgctagatgctgggcttttgaaactggagttcttttagacacggag
cttcctaatgagatcccagaaaatgattacatcaaattttttgaaccagactattcactg
aagattcctggtggacacatagaaaaccttaatagcaagtcctatcttggcacaataaag
atgaatgtactggaaaatcttcgttacatacaacatgctcctggtgtccagatgcaagag
gtacctccagatttttacctgcctgattttgatgaagatgagcagaatcctgatgaacgc
atggatcaacatacccaagacaagcaaatccagcgtgatgatgaatattatgatggtgac
aatgacaatgatcataacatggaggatatgtga

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