Coffea arabica (coffee): 113727237
Help
Entry
113727237 CDS
T11342
Name
(RefSeq) crossover junction endonuclease MUS81 isoform X1
KO
K08991
crossover junction endonuclease MUS81 [EC:3.1.22.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
carb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113727237
03460 Fanconi anemia pathway
113727237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113727237
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
113727237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
WHD_MUS81
EME1-MUS81_C
HHH_8
DUF6429
Motif
Other DBs
NCBI-GeneID:
113727237
NCBI-ProteinID:
XP_027107075
UniProt:
A0A6P6VWZ8
LinkDB
All DBs
Position
2c:33660719..33675066
Genome browser
AA seq
686 aa
AA seq
DB search
MDFQLRSVCPENEDVAAFMKNKWQEMAANPKGISDNLNNTFYKAYANVCNSKTPIKSLRD
LAEIKGVGKWILKLMQGFFDTSLGGSENEDAIKNGKRSKGTRRYVPQKNSVAYALLITLY
RGTTNGSEFMRKQELIDAAEASGLSRGPIVPEKGKGKPGKFGSSPREWYSGWSCMKTLVT
KGLVVKSSCPAKYMLTEEGKEAAKECLSRSGLVDCNDNSAIAHRSSCIEPKELDSSDMLR
FCGPEPKDIDSAEIDMPELASAQARSLNEVALTSFASNSEKKSFHIPSESLDRFVKMGYS
REQTTRAFLEASDASQTQDMSSLWPAVLCRLKEDQVYGLPIQPKITRVDDFAVATTRNSV
SNIHGNSLINGTCNGPLEGVKLPLLATSGQTACPLKACSFTDKEGTEALESKSHVLSMPP
LDVRERFEDAYGIILVLDDREHFASKGSQSRKIIDNISSQFKIQIEVRRLPVGDAIWIAH
HKRIGTEYVLDFVVERKKVDDLRLSIRDNRYKDQKLRLLRCGLKKVIYLVEGDPNSCEAA
ESIKTACFTTEILEGFDVQRTNGLGETLRKYGHLTQAIYQYYKSLDSEHKSSRVCPQYHE
FIRRCEDLDKLTVSDVFAIQLMQVPQVTEEVAIAVLEMYPTLRSLSQAYSVLDGDICAQE
DMLKKQSNNLISSAASRNIFQLIWGG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggatttccagctaagaagtgtgtgcccggagaatgaagatgtcgcagccttcatgaag
aataaatggcaagaaatggcggcaaatcccaaagggatttcggacaatcttaacaatact
ttttataaggcttatgctaatgtatgtaattccaaaactcccatcaaatccctccgagac
ttggcagaaatcaagggagtaggaaaatggattctgaagctaatgcaagggttttttgat
accagtttgggcggttcggagaacgaagacgcgattaaaaatgggaagagaagtaagggt
actagacggtacgtgccacaaaaaaactcagtagcttatgccttgttaattactctctac
agagggacaacaaatgggagtgaattcatgcgcaagcaggagctaattgatgctgctgaa
gctagtggactttctcgagggccaattgtgcctgaaaaggggaaagggaagcctggaaaa
tttgggagctcaccacgggaatggtatagtggatggagttgcatgaagacattagtaaca
aaaggattggttgttaagtcaagctgccctgcaaagtacatgcttacagaagaaggcaag
gaagcagcaaaggaatgtctttctagatctgggttagttgattgcaatgacaactcagct
attgcgcacagatcttcgtgtattgagccaaaggagttagactcatcagatatgctgaga
ttttgtggtcctgaaccaaaagatatagactcagcggaaatagacatgccagagttggct
tctgctcaggctcgttcattaaacgaagttgcacttacttcttttgcttccaatagcgag
aagaaatcatttcacatcccttctgaatctcttgataggtttgttaaaatggggtattct
agggaacaaactactcgtgcttttcttgaggcgtcagacgcatcgcagacccaggacatg
tcttcactctggccggctgttctatgtcgtctaaaagaagatcaagtctatggcctgcct
attcagcctaaaattacaagagtggatgattttgctgttgctacgacacgtaattctgtt
tctaacatacatggtaatagtttgatcaatggcacatgcaacgggccactcgagggtgta
aagttgccgcttcttgctacttccggtcagacggcttgtcctttgaaagcttgctcattc
acggataaggaggggacagaagctttggaatctaaatctcatgtattatcaatgccgcct
ttggatgtcagagaacgttttgaagacgcttacggtataatcttagtactggatgacagg
gaacattttgctagcaaggggtcccagtctaggaagattattgacaacataagttctcaa
ttcaaaattcaaatagaggttagaagactgcctgttggggatgccatttggatagctcac
cataaacgtattggaactgaatatgttcttgactttgttgttgagcggaaaaaagttgat
gatttgcgcttgtcaatcagagataatcgatataaagatcagaaactgcgacttctgagg
tgtggactcaagaaggtgatatatcttgttgaaggtgacccaaattcgtgtgaagctgct
gaaagtattaaaactgcttgtttcacgactgaaatattggaaggttttgatgtacaaaga
actaatggcttgggagaaacattaaggaaatatggacatcttactcaggccatataccag
tactacaagtctttggattcagagcataaaagctctagggtttgcccacaatatcatgaa
ttcattaggagatgtgaagatttagacaagctgactgtcagtgatgtgtttgcgatccaa
ttaatgcaggttccacaagtaactgaggaggttgctattgctgttctagagatgtaccca
actttgcgatctctttctcaggcatactctgtgctagatggtgacatttgtgctcaagag
gatatgctcaagaagcagagtaacaatttgattagcagtgctgctagcagaaacatcttc
caactgatttggggcggttga
DBGET
integrated database retrieval system
