Coffea arabica (coffee): 113727315
Help
Entry
113727315 CDS
T11342
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X2
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03022
Basal transcription factors
carb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113727315
09124 Replication and repair
03420 Nucleotide excision repair
113727315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113727315
03400 DNA repair and recombination proteins [BR:
carb03400
]
113727315
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113727315
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113727315
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
113727315
NCBI-ProteinID:
XP_027107205
UniProt:
A0A6P6VXB1
LinkDB
All DBs
Position
2c:40573518..40583839
Genome browser
AA seq
601 aa
AA seq
DB search
MADKQQQVVVKRARHKSSVKDPGTPGVLKLTKDRFTFMPNDPSSPVKHNVEFRTIKGHKF
TKDGTKQALLNLTQDQGGNYIFEFENFPDRNVCKDFVASAIALSGEAGRTVPEKSAVPIQ
DEQLSAAEMERRIKLLQEDSDLQKLHKQFVIGGILSEAEFWATRKKLLEQNYSRRPKQRV
ALKNDMWSTKPLADGQSNRVTFNLTPEIILQIFAEKPAVRQAYLNFVPNKMTEKEFWTKY
SRAEYLHSTKNVIAAAAEAAEDEELAVFLKQDDMLVNEARKKIRQVDPTLDMEADEGDDY
MHLPDHGLPRNDNKDVLDSQYEPYRRSFSQHLNQHAAVVLQGRVIDVELGDTRSVAEALA
RTKHAELAKDASDVYLDKERLERISRMTEIEDLQAPRDPAVAPLSIKDPRDYFDSQQANA
FSTLGDTVSGAKQLKCSVSTREAYCSLKECISEIKFQGLTEPTINSEVAFKVLNGLAQNI
SSNKYHLGRNPNESVLDSLPKITREELLLHWSSIQELLKHFWSSYPITTKYLLTKATKLK
DAMSQIYPKLQEIKESVQSDLRHQVSLLVQPMLQALDAAFAHYDADVQNRSARSGERPNG
F
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcagataagcagcagcaggtggtggttaagagagccaggcacaagtcatctgtgaag
gaccctggaacacctggcgttttgaaattgactaaagataggtttactttcatgccaaat
gatccgagttcacctgtgaaacataatgtagagttcagaacaattaaagggcacaaattc
accaaggatggaactaagcaagcgctccttaaccttactcaggatcagggtggcaattac
atttttgagtttgagaacttcccagaccgcaatgtttgcaaggattttgtagcctcagct
attgcactatccggagaagctgggagaacagttcctgaaaaatctgctgttccgattcaa
gatgagcaacttagtgcagctgaaatggagcgtcgtattaagctactgcaggaggatagt
gatttacagaaacttcacaagcaatttgtgattggaggtatcctatctgaagctgaattc
tgggcaacgaggaagaagttgttggagcagaattacagcaggaggccaaagcaaagagtg
gcattaaaaaatgatatgtggagtaccaaacctttagctgatggtcagtccaacagagtt
acatttaacttaacaccagagattatccttcagatttttgcagagaaaccagctgttcgc
caagcatatctcaattttgtgccaaacaagatgactgaaaaagagttttggactaaatac
tcgcgagcggaatacctccatagtacaaaaaatgtcattgctgcagcagcagaggctgca
gaagatgaggaacttgcagtatttttgaagcaagatgacatgttagttaatgaagctcgg
aagaagattaggcaggtggatcctactttggacatggaagctgatgaaggagatgattac
atgcatctcccggaccatgggctacctcgcaatgacaacaaggatgttttagactcgcaa
tatgaaccataccgaagatctttctcacaacaccttaaccagcatgcagcggtcgttctt
caaggaagagttatagatgttgagctaggagatacaagatctgtagctgaagcacttgca
aggacgaaacatgctgagttagctaaagatgcatctgatgtgtacttggacaaagagcgg
ttagagaggatttctcgaatgaccgagattgaggatcttcaggcacctcgtgaccctgca
gttgcaccacttagtattaaggatcctcgtgactacttcgattctcagcaagcaaatgct
ttcagcactcttggtgatactgtttctggtgcaaaacaattaaaatgtagtgtgagtact
cgtgaagcatattgttctttgaaggagtgcatctctgagattaaatttcagggtttgact
gagcccacgattaattcagaagttgcttttaaggttttgaatgggttggctcagaatatt
tcaagtaacaagtatcatcttgggaggaatccaaacgagagtgttttggatagtttgcca
aaaatcaccagagaggaactattacttcactggtcatccatccaggagttattgaagcac
ttttggtcatcatatcctattacaaccaagtatcttttaactaaggcaaccaaattgaag
gatgctatgtcccagatatatcctaagctacaggagatcaaggaatctgtgcagtcagac
ttgcgacatcaagtttcgcttcttgtgcaaccaatgcttcaggccctagacgcagctttt
gcacattatgatgcagatgtacagaacagatcggcaaggagtggggagagaccaaatggt
ttctaa
DBGET
integrated database retrieval system
