Coffea arabica (coffee): 113727365
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Entry
113727365 CDS
T11342
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a
KO
K14972
PAX-interacting protein 1
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
carb03036
]
113727365
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
MLL3/MLL4 complex
113727365
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
113727365
NCBI-ProteinID:
XP_027107290
UniProt:
A0A6P6VXI7
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Position
2c:55887267..55898605
Genome browser
AA seq
1393 aa
AA seq
DB search
MDSSSWRAPQGQMAQGPPQGGQAGGGGEVSAVPNAPPPATIDSGDWRTQLQADSRQRIVN
KIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNP
MANPLQANAATASKNPPDQAVHGMQSQIQNQQHPMPVVSSQSQSRQQLLPQNMQTNMTST
GVQNSAILASTLPTAGNLQQAPMPNIGQNSNLQNMQSVPSVSQNPVGSSMGQVMPSNVFT
NSQRQMQARQQQVVPLQQQQQTQNPQHYLYQQQLQHQYMKQKLQQGGAMAQPLMQSHIQQ
QQXHLLQPTQIQTSQQAVMQPSVMQSAPLSGLQQNQQSSMQQVTQPVIQQQSQAVLRQQQ
QQQQQQQQQSQQASMLHQQQTSMAQQPLLPAAQQPQQQQQQLIGQQPGATNIQHNQLIGQ
QNSMPDMQQQQQRLIGQQNNIQQQQLIGQQNSLSSMHQQQLAPQSSVSGLHQQSMRGTQP
GNSAMPTSQHSVVMLQQSKVAVQQQMQQNATALLPSQNQQPQQPQQQMVSQIQAQPGGLQ
HMQQQSNALQRDMQQKIQPTGSLLQQQNVVEQQKQLFQPQRAHPEASSTSLDSTAQTGNA
SGGDWQEEVYQKIKSMKDMYFLELNDMYMKIAGKLQQHDSLPQQPRNEQIEKLKFFKLML
ERLIGFLRCTKNDIQISHKEKLASIEKQIINILSTNRPRRPVSLQQVQLAQQQMSNMQHS
QPQTQIPQMQPQENQMNQQMQPMNVQSSITPMQPNSLTSLQQNTLSSVPPVSNLQQNMMS
TLQPASTLDPGQSNTHPLQQVAISSLQQNTASGPQTMNINSLSSQSGMTALQSNLINALQ
PNSTMIHNQQLKQQEQQMLHTQQLKQQLHPRQLQQQLLQRQQLMQQQQQQQQQQQLQQQP
QQQQQQHQQMKPQQQPSQLPGHQMSPLHQVTDSSDLKVRPQISVKTGVFQQHHTNSQRAA
YHHQQLKSGSPFPISSPQVLQAASPQVPPHASPQIDQQSMQTSIAKTGTPLQAANSPFVV
PSPSTPLAPSPMPSESEKLNSGISSLSNAGNIGPSHATTVSAAAQSLAIGTPGISASPLL
AEFTSLDGAHVNTSTAMPCKPHTVEKPHERLIKAVQSISNKALVASVDDISSVVSMVDRI
AGSAPGNGSRAAVGEDLVAMTKCRLQARNFFTQDGPTGTKKMRRSTSAMPSNVVSSVGSV
NDSMRHLNSSDAFELESTATSSIRRPRNEANHALVEEIHEINRCLIDTVVDISDEDVDPI
AVAAADGGEGTIVKCSFSAVALSPNLKSQYASARMSPIQPLRLLIPTNYPDSSPILLDKY
PVEVSKEYEDLSIKARSKFSISLRSLSQPMSLSEMARTWDICARAVISEFAQQSGGGTFS
SKYGTWENCVSAV
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggatagcagcagttggagggcgccgcaaggccagatggctcagggtcctcctcaaggt
ggtcaagcaggcggcggtggagaagtatcggctgtcccaaatgcacctccgccggctact
attgacagcggcgattggaggactcaactccaagctgattctcgtcaaagaatcgtaaat
aagataatggagactttgaagaggcatctgccattctctggacaagagggactgcaagaa
cttaagaaaattgctgtgaggtttgaggaaaagatttatactgcagcaactagccagtca
gattatttgagaaagatatctttgaagatgctgacaatggaaactaagtcccaaaatccc
atggctaatcctctacaagctaatgctgccactgcaagcaaaaatcctccagaccaagct
gtccatggcatgcaatcccaaattcagaaccagcaacatcccatgccagtggtgagcagc
caatcacaatcccgacaacagctgttaccgcaaaacatgcagactaatatgacatcaact
ggagtccagaattctgctattttggcttctacacttccaactgctggtaatttgcagcag
gctcccatgcctaatattggtcagaactccaatttgcagaacatgcagagtgttcccagt
gtttctcagaacccagtagggagttccatgggacaggtgatgccttcaaatgttttcact
aattctcaaagacagatgcaggctagacaacaacaggttgttcccttgcagcaacaacag
cagacacagaatccacagcattatctttatcaacaacagctgcagcatcagtacatgaaa
caaaagttacaacaaggaggagcaatggcacagccccttatgcaatctcatatccagcag
cagcaanagcaccttttgcaaccaactcaaattcaaacctcccagcaagctgttatgcag
ccatctgtaatgcagtcagctcctctatctggcctccagcagaatcaacagtcttctatg
caacaagtgactcaaccagtaattcagcagcagtctcaagcagttttgaggcagcagcag
cagcaacagcaacaacagcagcaacagtcacaacaggcttccatgttgcatcagcagcaa
acctccatggctcaacagccattactgcctgcagcacagcagccgcagcaacagcagcag
cagctgattgggcagcagcctggtgctacaaatattcaacacaaccagctgattggccaa
cagaatagcatgcctgatatgcagcaacagcaacaaaggctgataggccagcagaacaat
atacagcagcagcagctaataggtcaacagaacagcctttcgagtatgcatcaacaacag
ttggcccctcaaagtagcgtttctgggctccatcagcagtcaatgcgagggactcaacct
ggtaactctgccatgccgacaagtcagcattctgtcgtcatgttacagcaatctaaggtt
gcggtacagcaacaaatgcagcagaatgcaacagcattgctaccaagccaaaatcaacag
ccacagcaaccgcagcagcagatggtatcacagattcaagcacaaccagggggcctacaa
catatgcagcagcagtcaaatgcgttgcaaagagatatgcagcaaaagattcaacctaca
ggttctttgcttcaacagcagaatgttgtagaacagcagaagcagttatttcagccacaa
agagcccatcctgaggcatcatcaacttcgttagattcaacagctcagacggggaatgca
agtggtggagattggcaggaggaggtttatcaaaagattaaatccatgaaggacatgtat
ttcctggaattaaatgacatgtacatgaaaattgctggaaagctgcaacagcatgattct
cttcctcaacaaccgagaaatgagcagattgaaaagctcaaattctttaagctcatgctg
gaacgcctaataggattcttgcgatgtaccaagaatgacattcagatcagtcacaaggag
aagttggcttccattgaaaaacagataatcaatattctttctacaaatcggccccggagg
cccgtttctttgcaacaagtgcaacttgcccaacagcaaatgtccaacatgcagcactct
cagcctcagactcaaattcctcaaatgcagccccaggaaaatcaaatgaaccaacagatg
cagccaatgaatgtacagagttccataacaccaatgcagccaaatagcttgaccagcctg
caacagaacacattgtcctctgtgccaccagtttcgaatttgcaacagaatatgatgagt
accctacagcctgcttcgactttggacccaggacaaagtaatactcacccgttgcagcag
gtagctataagctctttacagcagaatactgccagtggtcctcaaacaatgaacataaat
tctttatcatcgcaaagtggcatgactgcgctgcaatcaaacctcattaatgctctacag
cctaattcgactatgattcataaccagcagctaaaacaacaggagcagcaaatgttgcat
acccagcaattgaaacaacaattgcatccccgtcagctgcagcagcagcttttgcaaaga
caacagctaatgcaacaacagcagcagcaacaacagcaacagcagctgcagcagcaacca
caacagcagcagcaacagcaccaacaaatgaagccacagcagcagccttcacagctgcct
ggacaccaaatgtcaccactacaccaggtaactgattcaagtgacttgaaggtgagaccg
cagataagtgttaaaacaggtgttttccagcaacaccataccaacagccagcgagcggcg
tatcatcaccaacagttgaagtcgggaagcccatttcctatttcttcaccacaagtcctt
caggcagcatcacctcaggttcccccgcatgcttcccctcaaattgatcagcagagtatg
cagacgtctatagcaaaaactggaactccattgcaggctgcaaattcaccctttgtggtc
ccatctccttcgactcccttggctccatcacctatgcctagcgagtcagaaaaactaaat
tctggcatttcatccctctcaaatgctggaaatattggaccctcgcatgcaactactgtg
tctgcagctgcccaatcactagcaattggcactcctgggatatcagcttcgccattgctt
gcggaatttacgagtttggatggagctcatgtcaacacatcaactgcaatgccctgcaag
ccacatactgtagagaagccacatgaacggttgattaaagcggtacaatcaatttcaaat
aaagcattggttgcctccgttgatgatataagctcagttgtcagtatggttgataggata
gctggatctgcaccaggcaatggatcaagagctgctgttggtgaggatttggtcgcaatg
acaaaatgtcgcttgcaagcaagaaactttttcacacaagatggaccgactggaacaaag
aaaatgaggcgctctacgagtgcaatgccttccaatgttgtttcatctgttggtagtgtg
aatgacagtatgaggcacttaaacagttctgatgcctttgaattggaatccacagctaca
tcaagtatcagaaggccaaggaatgaggccaaccatgcccttgtggaagagatacatgag
ataaatcgatgcctcatagatactgtggttgatatcagcgatgaagatgttgatccaatt
gcagtagctgcagctgatggtggtgaagggaccattgtcaagtgctctttcagtgctgta
gctcttagcccaaacctgaaatcacagtatgcttcagcacggatgtctccaattcagcct
ctgcgattgctcattccaactaattatcctgattcctctcctatactcttggacaagtat
cctgttgaagttagtaaagagtatgaagatctttctattaaagccaggtctaagttcagt
atatcactgagaagtctttcacagcctatgtcactttcggagatggcaaggacgtgggac
atttgtgctcgtgcagttatttcagaatttgcacaacaaagtggtggaggaactttcagc
tcaaaatatgggacttgggagaactgtgtgagtgcagtttag
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