Coffea arabica (coffee): 113728550
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Entry
113728550 CDS
T11342
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113728550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113728550
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113728550
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113728550
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
113728550
NCBI-ProteinID:
XP_027108750
UniProt:
A0A6P6W1D9
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Position
1c:53516817..53524769
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AA seq
663 aa
AA seq
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MSGLLNSSLNGSASNIPDSSGRSFTTSFSAQSGAASPVFHHTGGIQGLHNMHGSFNVPNI
PGTLGSRNTTMSNVPSSGVQQSAGNLTSGRFTSNNIPVALSQISHGSSHGHSGMTNRGGM
SVIGSPGYSSSTNGVGGSIPGILPTSAAIGNRNAVPGLGVSPLLGNAGPRITSSVGNIVG
GGNIGRSMSSGGGLSMPGLASRLNLTANSGSGNLNVQGPNRLMSGVLQQASPQVISMLGN
SYPSAGGPLSQNHVQAVNNLNSMGMLNDVNSNDGSPFDINDFPQLSSRPSSAGGPQGQLG
SLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNADYGMDLQQKEQVHDNAVSLMQPQQF
SMGRSAGFNLGAAYSSHRPQQQQHTPSVSSSGVSFSNLNNQDLLHLHGSDMFPSSHPNYH
QQTSGHPGIGLRPLNSQNTVSGIGSYDQLIQQYQQHQNQSQFRLQQLSSVSQPYRDQGLK
SMQASPTAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSD
EPAKGDPEFTVPQCYYAKQPPPLTQAYFAKFQLDTLFYTFYSMPKDEAQLYAANELHNRG
WFFHKELRLWFTRAPNVEPLVKTNSYERGSYISFDPNTWETIRKDNFVLHYEMLEKRPTL
PQH
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttacttaattcatcgttgaacgggtcagcatcaaatattcctgacagctct
gggcggtcgtttacaacgtctttctctgctcaatccggtgcagcctcccctgtttttcat
catacaggaggtattcagggactgcataatatgcatggaagttttaatgttcccaacatt
cctggcacacttggttcaagaaacacaacaatgagtaatgtgccatcaagcggggttcag
caatctgctggtaacctcactagcggacgtttcacatcaaacaacattccggttgctctc
tcacagatatctcatggcagttctcatggccattcagggatgacaaataggggtggcatg
agtgtcattggaagtcctggatacagtagtagcacaaatggtgttggtggttctattcca
gggattctcccaacttctgcagctattggtaatcgtaatgctgtccccggattgggggtg
tctccattattaggaaatgctgggccacgaattacaagctctgtgggtaacattgttggt
gggggcaacattggacggagtatgagttctggtggaggattgtctatgcctggtcttgct
tctcgcctgaatttgactgccaacagcggttctggaaatctaaatgtccagggaccaaat
aggctaatgagtggtgttctccaacaagcttctccacaggtcatttctatgctaggaaat
tcctacccttctgctggtggcccactttctcaaaaccatgtacaagcggtgaataatcta
aattcaatggggatgttgaatgatgtaaattcgaatgatggttctccatttgacattaat
gatttccctcaactgtccagccgccctagttctgctggagggcctcagggacaattggga
tcgttgcgcaaacaaggtcttagtcctatagttcaacaaaatcaggagttcagcattcaa
aatgaagactttcctgctttaccaggatttaaaggtggaaatgcagattatgggatggat
ctacagcagaaagaacaagtccatgacaatgctgtttctctgatgcaacctcagcaattt
tctatgggaagatctgctggtttcaacctaggggccgcatactcatcccaccgtccacaa
cagcagcaacatactccctctgtgagtagcagtggtgtctccttttcaaatttaaataac
caggatctactccatttgcatggatcagatatgtttccctcgtcccatccaaactatcac
cagcagacaagtggtcaccctggcataggattacggcctcttaattcccagaatacagtt
tctggtataggatcttatgaccagcttatccagcaataccaacagcaccagaatcagtcg
cagttccgtctgcagcaattgtcttctgtaagccaaccatacagggatcaaggactgaag
tccatgcaagcctcaccaactgctcctgacccatttggtttgcttggtttactaagtgtt
ataagaatgagtgatcctgatttgacatctcttgcacttggaattgatctaacgactctt
ggattgaatttgaactctactgaaaatcttcacaaaacatttggttctccatggtctgat
gaacctgccaaaggagatccagagttcactgtgccacagtgttactatgcaaaacaacct
cccccactaactcaagcttactttgcaaaatttcagttagatacattgttctacacattc
tacagcatgccaaaagatgaagctcagttgtatgcggccaacgaattgcataatcgaggc
tggttctttcacaaagaacttagattatggtttacaagggctcctaacgtggagcctctt
gtcaagacaaattcatacgagagaggatcctatatttcctttgatccaaacacatgggag
acgattcgcaaggataattttgtactccactatgaaatgttggagaagagaccaactcta
ccgcaacattga
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