Coffea arabica (coffee): 113728768
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Entry
113728768 CDS
T11342
Name
(RefSeq) uncharacterized protein
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
carb03016
]
113728768
Enzymes [BR:
carb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
113728768
Transfer RNA biogenesis [BR:
carb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
113728768
Prokaryotic type
113728768
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Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF835
Motif
Other DBs
NCBI-GeneID:
113728768
NCBI-ProteinID:
XP_071935969
UniProt:
A0ABM4WW06
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Position
2e:complement(20986350..20990621)
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AA seq
379 aa
AA seq
DB search
MSADQSEQSLNRRPGNHSPERPQKIARVNPIEESGCEEEEENQQKGPIVSETKMNPNPRI
QRYLIAIEYIGTRFAGAQQQSNCRTVVGVLEEAFHKFIGQPVSIFCSSRTDAGVHALSNV
CHVDVERISKRKPGETLPPHEPAVVKKAVNHFLQKNEGDIMVIDVQSVPSDFHSRYKAQE
RMYFYRLLSGPEPLSTFEKDRAWHVAEELDLLSMQKACQVLVGRHDFSSFRAAACQAKSP
IRSLDELNVTEVVSPLSFPSIKEREQSNYLVEDSFATSLKSESEVSHVSSMITSQVEPIP
TFGMRKQHRCFVVTARARSFLYHQVRLLVGVLKSVGTGNLTVDDVERILKAKTVAAASPM
APACGLYLGHVKFDPPSDM
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgatcaatcagagcagtctctcaatcgacggccaggaaatcattcccccgaa
cgtcctcagaaaatcgccagagtcaaccccattgaagaatccggctgcgaagaagaagaa
gagaatcagcaaaaaggcccgatagttagcgaaactaaaatgaatccgaaccctagaatt
cagcgctatttgattgcaatcgagtatattggcacccgctttgccggagctcagcagcaa
tccaattgccgcaccgtcgtcggcgttctggaggaggcttttcacaaattcattggacag
cctgtttcaatattttgctctagccgaacggatgcaggagttcatgctttatcaaatgtt
tgccatgtagatgttgaaaggataagcaaaaggaaacctggtgaaacgctacctccccat
gaacctgcagtggtcaagaaagctgtcaaccatttcttacagaagaatgagggtgatatc
atggtcattgatgttcagagtgttccatctgattttcattctagatacaaagctcaagaa
cgcatgtacttctatcgattactgtctggtcccgaacctttgtcaacatttgaaaaagac
cgtgcttggcatgttgcggaagaactagaccttctatctatgcagaaggcatgccaagtt
ttagttggacgtcatgatttcagttctttcagggctgctgcatgtcaggcaaagtcgccg
atcagatctttggatgaattgaatgtgactgaggttgtttcacctctatctttcccttct
atcaaagagagagaacagagcaattatttagtagaagattcttttgcaacctccctgaaa
tcagaatctgaggtttcacatgtttcttcaatgatcacctctcaagttgagcctattcca
acatttggcatgagaaaacagcatcgttgctttgtggtaactgcacgagcacgttctttc
ctctaccaccaggttaggttgctggttggtgttctcaaatctgttggaacgggaaactta
acagtagatgacgtggaacgcattctgaaagcaaagacggtagctgctgcaagtccgatg
gccccagcatgtggactctaccttggacatgttaagttcgatccgccttcagatatgtga
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