Coffea arabica (coffee): 113729502
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Entry
113729502 CDS
T11342
Name
(RefSeq) ATP-dependent helicase BRM-like
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113729502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113729502
03036 Chromosome and associated proteins [BR:
carb03036
]
113729502
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113729502
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
113729502
Chromatin remodeling factors
BAF complex
113729502
PBAF complex
113729502
GBAF(ncBAF) complex
113729502
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
QLQ
DEAD
Bromodomain
HDA2-3
AAA_14
Motif
Other DBs
NCBI-GeneID:
113729502
NCBI-ProteinID:
XP_071937276
UniProt:
A0ABM4WZR7
LinkDB
All DBs
Position
2e:75382410..75397523
Genome browser
AA seq
2225 aa
AA seq
DB search
MQSGGGGAQQGSGHGRSAAVSPASSSSGVSTSQLGLDQQQQQQQQQQRQSLQQQFLRRPE
GNDPILAYQAGSIHGVMGGGNFAVPSGSMQLPQQPRKFMDLGQQQIPSSGREEGQGRSQA
FEQHLLNPVHHAYYAFQAAQQKSPLGMQPQQQMKMGMFSPPSKDQEMRMANMKMQELISA
QAANQPSASSSKKSVEHVTRGGETQGDHAKQHLPDQRADSESPNQPKLLGQAVPVKPMPA
PQSQQNFQNMANNPNVMAAQMQALALERNIDLSNPANANLIAQFLMQSRMISQQKANESN
AVVQASSLHVQKQPVNSPTVANESSPRGNTSSDASAQSGSVKARYPSSSASPSSAPSAAV
VGNSSNVPLQQFSLHGRDSQLPPRQPNTIANGMPPMPPSNSPLNLKQGLDNALLAKGAQI
GPETLQMQYGRQPNRSSSQSMASSNDGILGNTSTSQDGTGAKMQQQNLGFTKQQLHVLKA
QILAFRRLKKGDGSLPRELLQAIAPPPLEMQMQQMLLPAGALNPERSAVKNVEEHERQFQ
LGDKATQQATNGDGRHRLKDEAAGDESATAPAVNVQSLAVPVKEPTPMVSVRKEEQQTTG
SSGKSEPEVERANQKFPIRNEFAAERGKAVTSQAAIPDTAPAKKPVQGNVTQPKDVGSTR
KYHGPLFDFPVFTRKHDSFGSSLMMNNNNNLTLAYDIKDLLAEEGMEIFRKKREENIRKI
GDILAVNLERKRIRPDLVLRLQIEEKKLQLADVQARLRDEIEQQQQDIMAMPERPYRKFV
RLCERQRQELARQVQASQKALREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHER
MLREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLSQTEEY
LHRLGGKITAAKNQQEVEEAANAAAVAARAQGLSEEEVRSAAACAREEVMIRNRFSEMNA
PRDSSSVNKYYNLAHAVNERVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEM
GLGKTVQVMSLIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHNWLPNVSCIYYVGGKDQR
SKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY
RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPAHNADDDWL
ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIILRCRMSAIQSAIYDWIKSTGT
LRVDPEDEKRRAQKNPIYQPKTYKTLNNRCMELRKACNHPLLNYPYFNDFSRDFLVRSCG
KLWILDRILIKLQRSGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIV
DFNSPNTDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVK
VIYMEAVVDKISSHQKEDELRSGGTVDSDDDLVGKDRYMGSIESLIRNNIQQYKIDMADE
VINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEEVELFDQM
DEDLEWTEEMTRYDQVPKWLRANTKEVNATIANLSKKPSKSTLFGGSIGGEASDMASEGE
KKRGRPKAKKLPIYTELDDDNGDFSEASSEERNEDSVREEEGEIGEFEDDEFSGAVGAPP
SNKDQSEEDIIPSTGGYAYPRASNSNKDMQMLEEAGSSGSSMDGQRLTQLVSPSVSSQKF
GSLSALDARPGSHSKKLPDDLEEGEIAVSGDSHMDVQQSGSWNQDRDEGEEEQVLQPKIK
RKRSIRLRPRLVADRVDEKPSLRRGDSIQIQYQVDQKLESQFKNDRGRKLLGDSAMLKQE
QTDSSMKNRRNMNPRKLPNTPKMPGLLKSGRFAHSDDTVHHLRENLDGKGLNASGTSTGG
SKMTEIIQKKCKNVISRLRKRIDREGAQIIPLLTDLWKRIESSGCTSGAEDNLFDLPEID
MRLDNQEYRGVMEFVSDVQLMLRSAVQYYGYSYEVRSEARKVHDLFFDILKIVFPENDFR
EAKNSLSFTSAASGSAHGSSSKQVLTGQNRRQKATSSAEPEPSRPQKPQPRGPIHEDTKT
RGHVSQKEARLGSSSSRDLGQQDDSRPFAHPGELVICKKKRKDREKLGFKAGNGSAGPVS
PTGVSRGIRSPAQASIAKDVKQVTQQQGWNSQSPQQVHSSGGNVGWANPVKRMRTDAGKR
RPSLN
NT seq
6678 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctgggggtggtggggcccagcagggcagtgggcatgggcggagtgcggcggtg
tcgcctgcttcctcctcttctggggtgtcgacgtctcagctgggacttgaccagcagcag
cagcagcagcagcagcagcaaaggcagtccttacaacagcagttccttagaagacctgaa
gggaatgaccccattttagcctatcaggctggaagtatccatggagtgatgggaggaggc
aactttgctgtgccttcaggctccatgcagttgcctcaacagcctaggaagtttatggat
cttggccaacagcaaatcccttccagtggccgagaggagggtcaaggtaggagtcaggcc
tttgagcaacacttactgaacccagtgcatcatgcttactatgctttccaggcagcccag
cagaaatcacctctaggaatgcagcctcaacagcaaatgaaaatggggatgttcagccct
cctagcaaggatcaagaaatgcggatggcaaatatgaagatgcaggagctcatttctgca
caggcggctaatcagccttcggcatcatcttcaaaaaaatcagtcgagcatgtaactcgt
ggtggtgagactcaaggggaccatgctaaacagcatctaccagatcaaagggctgattca
gagtctcctaaccagccaaaattacttggccaagcagtgccggtgaagcccatgcctgca
ccacaatctcaacaaaattttcagaacatggcaaacaatcctaatgttatggctgcacaa
atgcaggccttggcccttgagcgtaatattgacctttcaaatcctgcaaatgcaaatctg
attgcacaatttctcatgcagtctcgtatgatttcacagcaaaaagcaaatgaaagcaat
gctgtcgtacaggcttcatctcttcatgtgcaaaaacagccagttaattcaccaacggtg
gccaatgaaagttctcctcgtggtaacacatcaagtgatgcatctgcgcagtctggctcg
gtcaaagctagatacccttcttcatctgcttctcccagttcagctcccagtgcagctgtg
gtaggtaactccagtaatgtcccattgcagcagttttcccttcatggaagagacagccag
ttacctccaagacagccaaatacaattgccaatggaatgcctccgatgcctccctcaaac
tcacctttgaacttaaagcagggattggataatgcattactggccaaaggtgcacagatc
gggccagaaactttgcagatgcaatacggaaggcagccaaatcgatcttcttcacaatct
atggcttcatcgaatgatgggatcctgggaaatacctctacttctcaggatggaacagga
gccaagatgcagcaacagaacctagggtttacaaagcagcaactgcatgttctcaaagca
caaatacttgctttcaggcgccttaagaaaggagatggatctctgccacgagaattactc
caagctattgcaccaccaccactggagatgcagatgcagcagatgcttcttcctgctgga
gctcttaatccagaaagatctgctgttaaaaatgtagaagagcatgagaggcagtttcag
ttgggtgacaaggctactcagcaggcaaccaatggtgatggacgacacagattaaaggat
gaagctgcaggagatgagagtgcaactgcacctgcagttaatgtgcaaagtctggcagtg
ccagtgaaggaacctacacctatggtctctgttcggaaagaggagcagcaaactactgga
tcttctggtaaatctgagccagaagttgaacgtgcaaatcagaaatttcctatcagaaat
gaatttgcagcagagaggggcaaagcagttacctcacaggcagctattcctgatacagca
cccgcaaaaaaacctgtacaaggaaatgtcactcaacctaaagatgttggttcaactaga
aagtatcatggaccactgtttgattttcctgtctttactcggaaacatgattcttttggg
tcatcgttgatgatgaacaacaataataaccttactcttgcttatgacatcaaggatctt
cttgctgaggaaggcatggaaattttcagaaagaagagggaagaaaatattaggaagatt
ggtgatatactggctgtaaatttggagaggaaaagaatcaggccagatcttgttttacgt
ttgcaaatagaagagaaaaaacttcaactggcggatgttcaggctcgcttgagagatgag
attgagcaacagcagcaagatataatggcaatgcctgagaggccgtataggaagtttgtt
cggctttgtgagcgccaacgacaggaacttgctaggcaagttcaggcctcacagaaggcc
ttgagagaaaagcaactgaagtccatttttcagtggcgtaagaaactccttgaggcgcac
tgggccattcgtgatgctcgaactgcacgtaacaggggagttgctaaatatcatgagagg
atgttgagggagttctcgaagagaaaggatgatgatcgcaataaaaggatggaggctttg
aagaataacgatgttgagagatacagggagatgttgcttgagcaacagactagtatccct
ggcgatgctgcagagagatatgcggttctctcatcgtttttatctcagacagaagagtat
cttcacagactgggaggtaaaattactgctgcaaaaaatcaacaggaggtggaagaggct
gctaatgctgctgcagttgctgctcgagctcagggtctctctgaagaagaagtaagatct
gcagcagcctgtgccagggaggaagtaatgatcaggaatcggttctctgagatgaatgcc
ccgagggatagctcatctgtcaacaagtactataatcttgcacatgctgtgaatgaaagg
gttattaggcagccttcaatgttgcgagctggaactctacgagactatcagcttgttggc
ttgcagtggatgctttctttgtacaacaataaacttaatggaattttggcagatgagatg
ggtcttggaaagacagtgcaggttatgtcattaattgcctatctcatggagttcaaagga
aattatggcccacaccttattatagttccgaatgctgttctcgttaactggaagagtgaa
cttcacaattggcttccaaatgtgagctgtatttattatgttggtggaaaggaccaacga
tcaaaattgttttctcaagaggtttctgcaatgaaatttaatgtgcttgtgactacctat
gagtttattatgtatgatcgctcaaaactttctaaagtggattggaagtatatcataatt
gacgaagcacaacgaatgaaggacagggagtcagttctagctcgtgatcttgataggtat
cgctgccaaagacgcttgcttctgacagggacacctttgcagaatgatcttaaagagcta
tggtcgcttttgaatctgctacttccagaagtgtttgataatcgtaaagcatttcatgat
tggttctctcaacctttccagaaagaaggtcctgcacataatgcggacgatgactggctc
gagaccgaaaagaaagtcatcatcatccatagacttcatcaaattctggagcctttcatg
cttagacggcgtgttgaagatgtagaaggctcacttcctcccaaggtttccattattttg
agatgtagaatgtcagctattcaaagtgccatatatgactggatcaaatccactggtact
cttcgagttgatcctgaagatgagaagcgcagggctcagaaaaatccaatttaccagccc
aaaacatacaagactttaaacaacagatgtatggaactccgcaaagcttgcaatcatcca
ttgcttaattacccctattttaatgatttctctagagattttcttgtaagatcatgtggg
aaattatggattctcgataggattttaataaagcttcagaggagtgggcatcgggtattg
ctgtttagtactatgacgaaactcttagatatacttgaggagtatcttcagtggcgaaga
cttgtctacagacgcatagatggaacaaccagcttagaagacagagaatctgctattgtg
gactttaatagccccaatactgattgttttatctttttgcttagcatacgtgctgctggg
cgcggtctgaaccttcagtctgctgacacagtcatcatttatgatcctgatccaaaccca
aagaatgaggaacaggcagttgctagagcccatcgcattgggcagacgagagaagtaaaa
gttatttacatggaagcagtggttgataagatatcaagccatcagaaagaggatgaactt
cggagtggtggcacagtggattctgatgatgatctggttggcaaggaccggtatatgggg
tcaattgaaagcctcatacggaataacattcagcagtacaagatcgacatggcagatgaa
gttataaatgctggccggttcgatcaaaggactacacatgaagagagacgtatgacattg
gagacgttgttacatgacgaagaacgatatcaggagacagtccatgatgttccatcactt
caggaggtgaacaggatgattgctaggagtgaagaggaggtggagctttttgatcagatg
gatgaagatctggaatggacagaggagatgacaaggtacgatcaggttccaaagtggctt
cgtgcaaatactaaggaagtgaatgctacgattgctaatttgtccaaaaaaccatcaaaa
agcaccttatttggtggaagtattggcggggaagctagtgacatggcttctgaaggtgag
aaaaaacgtgggcgacctaaggcaaagaagcttcctatatacacagaactggatgatgac
aatggagatttttctgaagctagctccgaggagaggaatgaagattctgtacgtgaagag
gagggagaaattggggaatttgaagatgatgaatttagtggtgctgttggggcacctcca
agtaataaagaccaatcagaagaagatattattccttcgactggtggatatgcataccct
cgagcttcaaatagcaataaggatatgcagatgctcgaagaagcgggctcatcaggttca
tccatggatggtcaaagattgacgcaactcgtgtcaccttctgtgtcttctcagaagttt
ggttcactttcagctttagatgccagaccgggttctcactcaaagaagcttcctgatgat
ctagaagaaggagaaattgctgtgtctggagactctcatatggatgtccagcaatctggt
agttggaaccaggatcgtgatgagggtgaagaggaacaggtattgcaacctaaaataaaa
aggaaacgcagtatacgccttaggccgcgccttgttgcagacagggtcgatgagaagcca
tctcttcgtcgtggagattctattcaaatacaatatcaggtggatcaaaaacttgagtct
caattcaagaatgaccgtggacgcaaattgcttggagactctgccatgttgaagcaggag
caaactgattcatctatgaagaatagacggaacatgaacccccggaaattacctaataca
cctaagatgcctggtctgctgaaatctggaaggtttgctcattcagatgacactgttcat
cacttgagggaaaacttggatggtaagggcttaaatgctagtgggacatcaactggtggt
tcaaagatgactgagatcattcaaaaaaagtgcaagaatgtgattagcaggctccgaaag
agaatagaccgggaaggtgcacagatcattccattgctaactgatctgtggaaaagaatt
gaaagctctggttgcacgagtggagctgaggataatctctttgatttaccggagattgat
atgcgtcttgacaaccaagagtacaggggagtgatggaatttgtttcagacgtgcagctt
atgttaagaagtgccgtgcaatattatggttattcatatgaggtgagatctgaagcgagg
aaagtccatgatcttttcttcgacatcttgaagatagtgtttccagagaatgatttccga
gaagccaaaaactctctctctttcacgagtgcagcctcaggctctgcacatggttcatct
tcaaaacaagtgcttactggtcaaaacaggcggcaaaaagcaacgagtagtgcagaacct
gagcctagtcgtcctcagaagcctcagcctcgtggaccaatacatgaagacacaaaaacg
aggggccatgtgtcacagaaggaggcaaggcttggaagtagcagcagccgggatcttggc
caacaagatgattcacgcccattcgctcatccaggggagcttgttatttgcaaaaagaag
agaaaggacagggaaaagttgggattcaaggcgggaaacggttcagctggtcctgtgtca
cctactggcgtcagtcgtggcattagaagccctgcacaagcttcgatagccaaagatgtg
aagcaggttacccaacagcaagggtggaatagccagtctcctcagcaggtgcacagcagt
ggtgggaatgttggctgggccaatcctgtcaaaaggatgcgaacagatgctggaaagaga
cgcccaagccttaattga
DBGET
integrated database retrieval system
