Coffea arabica (coffee): 113729888
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Entry
113729888 CDS
T11342
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X3
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113729888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113729888
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113729888
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113729888
mRNA degradation factors
3'-5' decay
Ski complex
113729888
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Ski2_N
CHCH3_N
AAA_22
Motif
Other DBs
NCBI-GeneID:
113729888
NCBI-ProteinID:
XP_027110003
UniProt:
A0A6P6W3R0
LinkDB
All DBs
Position
1c:complement(54705814..54722379)
Genome browser
AA seq
1357 aa
AA seq
DB search
MDRIEAGQEMAFRVGFTGHSGHLTIEPLPPVQRSTPLSSLPDFILPPAFPRETPESIKEY
IKETHLLPRLDPDEFSAEKSGKQWEFDWFDRAKIPLEPSLPRSIVIPTWELPFRRTKRSS
GHDIWEPRSEQVDIAELTAGAEDSGVLPRIVGPAKDYVKGSLSSHPFRPGGLEDSHSLGR
ILPDGAVNGEWVWEVLNGGPAQSIAPSFKDGLDLGDLRAHSSSWNVFVDQSDVKPVQDVK
LNDLSLQFDDLFRKAWEEDVLGYAADGDTSKVQVETKELGSVESESETNVDNSSVASNIA
KIESSVLDEVLSAELQATTTILNGDQDGSIEQPKKAWVVSGASGKIVEQFHELVPDMALN
FPFELDPFQKEAIYYLERGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTIS
NQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHY
VNDVERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKKKQIRVTGTTKRPVPL
EHHLFYSGELYKVCENEEFVPKGLKAAKDASKRKTTSAVAGGAGSYPGSSPSNDRARAHR
HESSHQGKQTRHSGSQNLGNSRAVWGNQNNGLGPNTGLRRSEATMWLSLINKLSKKSLLP
VVMFCFSKNRCDKSADSMTTTDLTTSSEKSEIRIFCDKAFSRLKGSDRNLPQIVRVQSLL
HRGIGVHHAGLLPIVKEVVEMLFCRGLVKVLFSTETFAMGVNAPARTVVFDTLRKFDGKE
FRQLLSGEYTQMAGRAGRRGLDETGTVIVMCRDEIPDERDLKPVIVGRPTRLESQFRLTY
IMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMRKLAQQTKTIECIKGEPAIEE
YYEMSSEADTHSTKIVEAVMQSPGSQHYLSPGRVVVVKSESAQDHLLGVVVKAPSSNNKQ
YIVFVLMPELPLTLQNPSDSSNLKDDKGAGLQILIPKSKRGLEDDYYSSVTSRRGSGVVN
IKLPHRGTAAGMNYEVLGIDNKEFLSICNCKIKIDQVRLLEDVSAGAYSNTVQQLLLLKS
DGNKYPPPLDPVKDLKLKDLDVVKAYHKLNILLQKMAQNKCHGCVKLEEHIKLARELKRH
REEVNTLKFEMSDEALQQMPDFQGRIDVLKEIGCVDADLVVQIKGRVACEMNSGEELICT
ECLFENQFDDLEPEEAVAIMSAFVFQQKNTSEPSLTPKLSLACKRLYDTAIRLGQLQASF
KIQIDPEEYARENLKFGLIEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFK
NAAAIMGNSALYKKMETASNAIKRDIVFAASLYVTGL
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggaccgaatcgaggctggacaagagatggctttccgggttggattcaccggccacagc
ggtcatctcacgatagagcctcttcctccggttcaacggtccactcctctcagttcactc
cctgatttcatactccctcctgcatttccacgggaaacgccagaatcaataaaagaatat
ataaaggaaacgcatctactcccaaggttggatcctgacgagttttctgcagaaaaatct
ggaaagcaatgggaatttgattggttcgacagagctaaaattccattggagccttctttg
cctcggtctatagttattccaacatgggaattaccttttagacgtacaaaaagaagttct
gggcatgatatatgggagcctagatcagaacaggtagatatagcagaacttacagcagga
gctgaggattctggtgtattgccacgtattgttggacctgcaaaagattatgtaaaagga
agcctcagcagccatccttttcgtccaggtggcttggaggattctcattctttggggagg
atccttcctgatggtgctgtcaatggtgaatgggtatgggaggtacttaatggaggtcct
gcacaatctattgcgccgagctttaaggatggtctggatctaggtgatctcagggcacac
tcaagttcatggaacgtttttgtggatcagagtgatgttaagcccgtgcaagatgtgaaa
ttgaatgatttgtctttgcagtttgatgacttgtttagaaaagcttgggaagaggatgtg
ttaggttatgctgcagatggtgacacatcaaaggtccaagtagaaacaaaagaattaggc
tctgttgaatcagagtcagaaactaatgtagataattcttcagtggccagtaatattgca
aagattgaatcatctgttttggatgaggtattgtctgctgaattacaagcaacaactaca
atcctcaatggagatcaagatggtagcattgaacagccaaaaaaggcatgggttgtcagt
ggagccagtggaaagatagtggaacagtttcatgaacttgttcctgacatggcacttaat
tttccgttcgaattggatccattccaaaaggaggccatctattatcttgaaaggggagac
tctgtttttgtggcagctcacacatctgctggaaagacagttgttgcagagtatgcattt
gctttggcaacaaaacattgcacgagagctgtatatactgctcccatcaagaccatcagt
aaccaaaagtacagggacttttgtgggaaatttgatgtgggtcttctcactggtgatgtc
agtttgaggccagaggcctcttgtcttatcatgactacagagatattgagatcaatgctc
tatcgtggtgctgacatcatacgtgacatagaatgggtaatatttgatgaagttcattat
gtgaacgatgttgaaagaggtgttgtttgggaagaagttattatcatgctccccaggcat
attaactttgtcctgctctcagccacggtaccaaatacaattgagtttgctgattggatt
ggtcggacaaagaaaaagcaaattcgtgtgactgggacaacaaagagacctgtccctttg
gagcaccacctcttttattctggagagctttacaaagtctgtgaaaacgaagagtttgtg
cctaaaggactgaaagctgccaaagatgctagtaagaggaagaccacaagtgctgttgct
ggtggagctggatcttatcctgggtcttctccatccaatgatagggctcgagctcacagg
catgaaagttctcatcagggaaaacagaccaggcattctggatcccagaacttagggaac
tctcgggctgtctggggaaaccagaacaatggccttggccctaatacagggttgaggaga
tcagaggctacaatgtggctatcgctgattaacaagctgtcaaagaaatccttgttacct
gtggttatgttttgtttctcaaagaatcggtgtgataaatcagctgatagtatgaccaca
actgaccttacaactagttcggagaaaagtgagattcggatcttctgtgataaagcattt
tcacggctaaaggggtccgataggaacctaccacagattgtcagagttcaaagccttctt
caccggggcattggtgtgcatcatgctggactgcttccaattgtcaaggaagtagttgaa
atgcttttctgtcgtggtttggtcaaggttttattctcaactgagacatttgcaatggga
gtgaatgcccctgcaaggacagtggtgtttgatactttaaggaagtttgatggcaaggaa
tttagacagttactctcgggagagtatactcagatggctggtcgtgctgggaggagagga
ctggatgagactggtacagttattgtcatgtgtcgtgatgaaatccccgatgagagagat
ctaaagcctgtgatagttggtaggccaactaggcttgaatctcaatttcgactgacctat
atcatgatcctgcatctcctccgtgttgaagaactgaaggtggaggatatgctaaaaaga
agttttgctgaattccatgctcagaaaaaacttcccgagaaacagcaacttctaatgcga
aagcttgcccagcaaacaaaaactattgaatgcataaagggtgaaccagcaatagaggag
tactatgagatgtcctcagaagctgacacacatagcaccaagatagtggaggcagtcatg
cagtcccctggctcccagcattatcttagtcctggaagagtggtggttgtaaaatcagag
tcagcccaggatcacttgctaggcgttgttgtgaaagcaccttcttctaacaataagcag
tacatagtttttgtgctgatgcctgaattgcctttgacattgcaaaacccatcagatagt
agcaacttgaaggatgataaaggtgctggtttacagatattgatacctaagtcaaaacgt
ggtctggaggatgattattattcttcagtcacttctcggagaggttcaggtgttgtcaac
attaaattacctcatcgtggtactgctgctgggatgaattatgaagttctaggaattgat
aacaaagagttcctttcaatatgcaactgcaaaataaagattgatcaagttcgacttctg
gaagatgtcagtgctggagcctactcgaatactgtacagcagctgctgttattgaaatct
gatggaaataagtaccctccacctctagatccagtcaaagatctgaagctgaaagaccta
gatgttgttaaagcctatcataaattgaacattttgttgcaaaagatggcacaaaataaa
tgccacggatgtgtcaaattggaggagcatatcaagttagcccgtgaattgaagcggcac
agagaggaagtcaataccttgaagttcgaaatgtcagatgaagcactgcagcaaatgcct
gattttcagggtcggattgatgttttgaaggaaatcggttgtgtagatgctgaccttgtg
gttcaaataaaaggccgtgttgcttgtgaaatgaattctggggaggaattaatatgcact
gagtgcttgtttgagaatcagttcgatgacttggaaccagaagaagctgtggcaattatg
tctgcctttgtctttcagcagaaaaatacctctgaaccttctcttacaccaaagctttct
ctggcttgtaagagattgtacgatacagcaataaggctaggtcaacttcaagcaagcttc
aaaatacagatcgatccggaagagtatgctcgggagaatctcaagtttggtctcattgaa
gtggtttacgaatgggcaaagggtactccatttgctgatatttgtgaactcactgatgtt
cctgaaggtttgatagtcaggaccatagttagattggatgagacatgccgtgaatttaaa
aatgctgctgcgatcatgggtaattctgccctttacaagaaaatggaaactgcttcgaat
gccataaagcgcgacattgtctttgctgctagcttgtacgtcacagggttgtaa
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integrated database retrieval system
