Coffea arabica (coffee): 113730079
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Entry
113730079 CDS
T11342
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2 isoform X1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113730079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113730079
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
113730079
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
113730079
NCBI-ProteinID:
XP_027110332
UniProt:
A0A6P6VPK1
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Position
2e:complement(2529130..2532850)
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AA seq
200 aa
AA seq
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MVTSSVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANSAALQPDWQIGECVAIWW
RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFQFNMIHP
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggtgacgtcatccgtggtgaacacgtacccgctgtctagttacaccttcgggacaaag
gagccgaagatggagaaagacacctccgttgccgatcgccttgctcgcatgaaagtcaat
tatatgaaggagggcatgaggactagcgtagaaggaattttactggtacaagagcacaat
catccacacattcttcttcttcaaattggtaatactttctgcaaacttcctggtgggcgg
ctgaagcctggagagaatgaaatcgagggcttgaagcggaaactgtcgagcaaacttgct
gctaattcagcagctcttcagccagattggcagattggtgaatgtgtggccatatggtgg
agaccgaattttgaaacaataatgtatccatactgccctccccacataacaaaacctaag
gaatgtaaaaagcttttccttgttcacctttccgaaagagagtattttgctgttccaaag
aacttgaaacttcttgcagttccattgttcgaactctatgacaatgttcagagatatggg
cctgtgatctccactatcccacaacagctgtctagattccagttcaacatgatccatcct
tga
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