Coffea arabica (coffee): 113730183
Help
Entry
113730183 CDS
T11342
Name
(RefSeq) E3 ubiquitin protein ligase RIN2
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
carb Coffea arabica (coffee)
Pathway
carb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
113730183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
carb04121
]
113730183
Enzymes [BR:
carb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
113730183
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113730183
Multi subunit type E3
ERAD complex
113730183
LMBR1L-GP78-UBAC2 complex
113730183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
CUE
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-RING_11
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_16
zf_RING_Vps8_fungal
U-box_ZFPL1
PHD
zf-RING_Vps41
E3_UbLigase_EDD
RINGv
zf_RING_Vps8
zf-HC5HC2H
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
113730183
NCBI-ProteinID:
XP_027110502
UniProt:
A0A6P6W8W1
LinkDB
All DBs
Position
2e:complement(3458899..3465739)
Genome browser
AA seq
580 aa
AA seq
DB search
MGVSYLSVSVVCTVLSFVGLQCWTAISLEQLKSDGLISDSVISSGDGSHALELLLSSYTT
IALAANFALNTFILLILCLKTIFFSELYSSEARKLVERLINYVIYKGTFLPLVVPPNVFQ
AGLWSIWLAVLCCLKMFQALARDRLERLNASPSVTPWTYFRVYSALLLVFSVDILWIRLC
LSVYTTISSPTSYLLFFEPLSIAFETLQAIVVHGFQLLDVWLHHSAGDTANCRISKLLDL
SATGSLWEWKGILNRNLGFFLDMMTFFMALAHYLHIWWLHGMAFHLVDAVLFLNIRALLS
AIVKRIKGFVKLRMALGTLHEALPDATLDELRAYDDECAICREPMAKAKKLSCSHLFHLA
CLRSWLDQGLSENYSCPTCRKPLFMGRSEHEANSHASEISSDEQLARQISAGLHRPNLPG
HGQSTGIFPNQTQNPLEAGDWRGTAIDSSWLRLDGAGPSSGVRSVGLGRVQMMMRQLAAV
GETYAHTALEDAAWSLWPMNPSQAGTSRSPVPPGPTRYPGSAGGLHMRTPSRASNDNIAG
MLAMAETVREVLPHIPDEIIIQDLQRTNSATITVNNLLQM
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgagctacttatctgtctcagtggtctgcacagttttgagctttgtcggactt
cagtgttggacagcaatatcccttgagcaactaaaatccgatgggttgattagtgatagt
gttattagctcaggggatgggagccatgcattggagctgcttttgagttcctataccact
attgctttggctgcaaattttgcacttaacacatttatccttctaattttgtgtctcaag
actatattcttttcagagttgtactcatctgaagctcgaaaattagttgaacgccttatt
aattatgttatatacaagggaacttttcttccactggttgtcccaccaaatgtatttcaa
gcgggcttgtggtcaatctggttggctgtgctatgctgtttgaagatgtttcaagcatta
gctagggatcgtcttgagcgtttgaatgcttctccatcagtgactccgtggacatacttt
cgtgtatattctgcgttgttgctggttttctctgtcgacatactctggataaggctgtgt
ttgtcagtgtacaccacaattagttcaccaacatcttatttgttattctttgagcctctt
agcattgctttcgagactttacaggccattgtggttcatggatttcaattgcttgatgta
tggttgcatcactcagcgggagatactgcaaattgccggatatccaaactccttgatttg
tctgctacaggatcattgtgggagtggaaaggtattctgaatcggaacttgggttttttc
ctggatatgatgacattttttatggctcttgcacattatttgcatatttggtggcttcat
ggcatggcttttcatcttgttgatgctgtccttttcctaaatatacgtgcattgttaagt
gcaattgtaaaacgcataaagggtttcgttaaactgaggatggcattgggcactcttcat
gaggcacttccagatgcaacattagatgagctaagagcttatgatgatgaatgtgctatt
tgtcgggaacctatggcgaaggctaagaagctatcttgcagtcatcttttccatcttgca
tgcttgagatcttggctagatcaaggcttaagtgagaattattcatgtcctacttgtcga
aagcccctttttatgggaagatctgaacatgaggcaaactctcatgcttcagaaatttca
agtgatgagcagcttgcacgtcaaattagtgctggacttcataggcccaatcttcctggt
cacggccagtctacgggaatctttcctaaccagactcaaaatccattagaagctggtgac
tggaggggcactgcaattgattcaagttggctcaggttagatggagctggtccttctagt
ggtgtaagatccgttggattgggtcgagttcagatgatgatgaggcagcttgcagctgtt
ggtgaaacctatgcacatactgcgcttgaggatgctgcctggagtctttggcctatgaat
ccctctcaagctggtacttcccgctcacctgttcctcctggtcctacaaggtatccagga
agtgcaggtggtttgcatatgaggaccccctcacgagcttcaaacgacaacatagcaggc
atgcttgccatggctgagactgtccgggaagttctgccgcacattcctgatgaaataatt
attcaggatttgcagcgaacaaattccgccaccattactgtgaataatcttttgcaaatg
tga
DBGET
integrated database retrieval system
