Coffea arabica (coffee): 113730306
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Entry
113730306 CDS
T11342
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113730306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113730306
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
113730306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
DUF3533
Motif
Other DBs
NCBI-GeneID:
113730306
NCBI-ProteinID:
XP_027110726
UniProt:
A0A6P6W837
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Position
2e:5010872..5018551
Genome browser
AA seq
1277 aa
AA seq
DB search
MKRKRLDESSHPLDTYPFEAYWWGSWHAVERLRIKDGAITMHVVDNGEVIEEMIPTSNLR
MRSRKATINDCSCILRPGLDVCVLTASSDTEDSSEDSLVWADARIRSIERKPHGAICACH
FYVSFYIREDAALTLQKKLSKETTRVQIDQIMILQKLDSVPSENQHYRWRTSEDCSSLLK
YKLFTGKFCSDLTWLVVASIVKQAIFDVRSVEGRMVYEVLDVDCSTDSGSNSYCVNFKLD
NGILSPIIVQFVPGIGKRTGDEMHTDAPLCLYEPMDLRRSKRRFVQPDRYLGCDVPEFDV
ETPRIGGRKMCKWDYEDEECEEMPLALSIQADHKYQKHDENENRDFSCKRRSDKNIRVCG
SADKSTVSKNSESPPTREKKQSDQSQLALVPLSISSEGKSILRELDASYDENPEGHSGNI
ADLISRYLYENGSTAKGRKKKASELNFNRKEHGFMVQHLPRKTYKRSAFCIRSEWESIYN
MKPSGKKSFSAAACRELLTRCMENIDATINMEQPPIIDQWEEFKSTKFQNQKETNDKAEK
NHEEEISEIDMLWKEMELALASCYFLDDGEESHAFPTERKLSTEKGGTGCHHDYRLNEEI
GVICRLCGFVSTEIKDVSPPFWSSASGFVHKEQRAEENLEHKPNGAEGLDNFQVPASSKA
PSSEGEVEDSVWALIPDLRSKLRAHQKRAFEFLWGNIAGSLVPALMEEKSKRRGGCVISH
TPGAGKTLLIITFLVSYLKLFPGSRPLVLAPKTTLYTWYKEVIKWNIPIPVYQIHGGQTY
KGEVLRQRLRSNAGLPRNQDFMHVLDCLEKMQKWLSHPSVLLMGYTSFLTLTREGSNYAH
RKYMAQVLRQCPGILVLDEGHNPRSTKSRLRKALMKVNTKLRVLLSGTLFQNNFGEYFNT
LCLARPNFVKEVLKELDPKYKRNKKGQKNRFSQENRARKMFTDKISKLIDSNIPDERLEG
LNILKNLTGGFIDVYEGGSSDNLPGLQCYTLMMKSTSLQQGILDKLQNQRPVYKGFPLEL
ELLITLGAIHPWLIRTTACSNQYFSAEELEDLERTKLDVKFGSKVRFVMSLIPKCVFRRE
KVLIFCHNIAPINLFLELFATIFHWRKGKEVLVLQGDIELFERGRVMDKFEEAGGPSKVM
LASITACAEGISLTAASRVILLDSEWNPSKSKQAIARAFRPGQDKVVYVYQLLAAGTLEE
EKYSRTTWKEWVSSMIFSEELVEDPSRWQAQKIEDELLREIVEEDRATLFHRIMKIEKAS
SVIREGEGRSVKGQLGA
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggaagagattggatgaaagcagtcatccacttgatacatatcccttcgaggca
tattggtggggctcttggcatgctgtggagcgcttaagaattaaggatggagccattacc
atgcatgtagtagataatggggaggtgatcgaggagatgattccaacgtcaaatctccga
atgaggtcaaggaaggccacaattaatgattgttcatgcatcttgagacccggccttgat
gtatgcgttctgactgcttcatccgatacagaagactcgagtgaagactcgcttgtctgg
gctgatgccagaataagatctattgaaaggaagcctcatggtgctatatgtgcttgccat
ttctatgtcagtttctatatcagggaagatgccgctcttacgttgcagaaaaaacttagt
aaagaaacaacaagggtgcaaattgatcagattatgattcttcagaaacttgactcagta
ccttctgagaatcagcactaccgatggagaacgtcagaggattgctcttctcttctgaag
tacaaacttttcacgggaaaattctgctccgaccttacatggctggttgtcgcatccatt
gtaaagcaagccatttttgacgtaaggtcagtagaaggtcgaatggtttatgaggtcctc
gatgttgattgcagcaccgattctggcagtaattcctattgtgtgaatttcaaattagac
aatggaatattgtcccccatcattgtccaatttgttccaggcattgggaaaagaaccgga
gacgagatgcatactgatgcaccactgtgcctttatgagcccatggacttgcgtcggtca
aagcgccgctttgtgcagcctgaccgttatttgggttgtgatgtgcccgagtttgatgtt
gaaactccaagaatagggggacgaaagatgtgcaaatgggattatgaggatgaggagtgc
gaggaaatgccacttgcactatcaattcaggctgaccacaaatatcagaagcatgatgaa
aatgaaaacagggatttctcttgcaaaagaagatcagacaagaatattcgtgtatgtgga
agtgcagacaaatcaactgtctctaaaaattctgaaagcccaccaactcgggagaagaaa
caatctgaccaatcacaacttgctttggttcccttgtcaatatcttcagagggcaaatca
attctgcgtgaactggacgcttcatatgatgaaaatcctgaaggtcattctggaaatatt
gctgaccttatttccaggtatctttatgaaaatggttccaccgccaaaggacgcaaaaag
aaggcttctgagttaaacttcaacaggaaggagcatggattcatggtacaacatttaccc
agaaaaacatacaagagaagtgcattttgcatccgttctgaatgggagagtatatacaat
atgaagccttctggaaagaaatcatttagtgctgctgcatgcagagaattgttgacaaga
tgcatggagaacattgacgcaaccatcaatatggaacagccaccaattattgatcaatgg
gaagagttcaagtcaacaaaatttcagaaccaaaaggaaactaatgacaaagctgaaaag
aatcatgaagaggaaatctctgaaattgatatgttgtggaaggaaatggaacttgccctg
gcatcttgttattttcttgatgatggtgaggaatctcatgcatttccaactgaaaggaaa
ctgtcaactgagaaaggtggaacaggatgtcaccatgattatcgactcaatgaagaaatt
ggagttatttgccggctgtgcggatttgtgagcacagaaataaaggatgtctcaccccca
ttttggtcatctgcaagtgggtttgtacataaggagcaaagggctgaagaaaatttagag
cataagcccaatggagctgaaggcctcgataattttcaagtcccagcttcctccaaggca
ccttcatcagaaggagaagtggaggacagcgtgtgggccttaattcctgatcttagaagt
aaattgcgtgcccaccaaaagcgagcttttgaatttctctggggaaacattgctggatct
ttagtaccagctcttatggaagaaaagagcaaaagaagaggtggttgtgttatttctcat
acacctggagctggcaagactttgttgattataactttccttgttagctacttgaaacta
tttccaggttctcgacctctggtgctcgctcctaagacaacactttatacatggtacaag
gaagtaattaagtggaacattcctattcccgtttaccagattcatggtggccaaacatat
aaaggtgaagttttaaggcaaagattgcgctcaaatgcaggtcttcctcgaaaccaagat
tttatgcatgtcttggattgtctggaaaagatgcagaagtggctttcccatcccagtgtc
cttctcatgggttatacctcattcctgacattgacgagagaaggttcaaattatgctcac
cggaaatatatggcccaagttctgcggcaatgtccggggattctagtacttgatgaaggg
cataacccaaggagtacgaaatcaaggctaaggaaagctttgatgaaagttaatacgaaa
ctcagagtattactttccggtaccttgtttcagaataattttggggagtatttcaacact
ctttgcttggcaagaccaaactttgtgaaagaggtgttgaaagagctggatccgaagtat
aagaggaacaaaaaaggtcaaaaaaaccgcttctcgcaggaaaatagagcaagaaaaatg
ttcactgacaaaatttcgaagctcatcgactcaaatatacctgatgaaaggttggaaggt
ttaaatattttgaagaatctgactggtggatttatagatgtgtatgaaggtgggagctct
gacaatctccctggtttacaatgttacacattgatgatgaagtcaacctctcttcaacaa
ggaattttggacaagcttcaaaatcaaaggcctgtctacaaaggtttcccactggaacta
gagctcttaatcactcttggggcaatccatccttggttgataagaacaactgcttgttct
aatcaatatttcagtgcggaagaattggaggatcttgaaagaactaaattggatgtcaaa
tttggttcaaaggtcagatttgttatgagtcttatacccaagtgtgtgtttagaagggaa
aaggtcttgatcttttgccataacattgctccgatcaatctgtttcttgagctatttgcc
accatttttcactggcgaaagggcaaagaggtgctagtgcttcaaggtgacatcgagctc
tttgagagagggagggtgatggataaatttgaggaggctggtggaccttcaaaggttatg
ttggcatctattacagcctgtgctgaagggattagcttaactgcagcgtcacgagtaata
ttattggattctgagtggaatccttcaaagagcaagcaagcaattgctcgggcgtttcga
ccaggtcaggacaaagttgtgtatgtgtatcagctcctggctgctggcacactggaagaa
gagaaatacagtagaactacatggaaggagtgggtttcaagtatgatatttagtgaagaa
cttgttgaggatccttctcgctggcaagcacaaaaaattgaagacgaactactgagggag
atagtggaggaagaccgagctacattatttcacaggataatgaagattgagaaggcatca
agtgtgatcagagaaggggaaggacgaagcgtgaagggacaattgggtgcatga
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integrated database retrieval system
