Coffea arabica (coffee): 113730310
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Entry
113730310 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18-like isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
carb03009
]
113730310
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113730310
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
113730310
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
113730310
NCBI-ProteinID:
XP_027110731
UniProt:
A0A6P6VP22
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Position
2c:4889669..4895284
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AA seq
609 aa
AA seq
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MIKTQTIRQPRKNKNRQTMASAQGSNRNRALTDTRFSDLKPPLSQPVLDALTNSGFDFCT
PVQAATIPLLCSYKDVAVDAATGSGKTLAFLVPLVEILRRSSSPKPHQVLGLIISPTREL
SSQIYHVAQPFISTLSNVKSVLLVGGVEVKSDVRKLEEEGANLLIGTPGRLFDIMERMDL
LDFRNLEILILDEADRLLDMGFQKQINAIISRLPKLRRTGLFSATQTEAVEELSKAGLRN
PVRVEVQAEMKMLDNPTSSQQQAPSKTPSGLHIEYLECEADKKPSQLVQLLTQNMSKKII
IYFMTCACVDYWGVVLPQISALKRLSIISLHGKMKQTAREKALASFTSLASGVLLCTDVA
ARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGRQGNAIVFLLPKEEAYVEFLRVRRV
PLEERESPDDVCDIVPQIRSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEIG
KLGMGYGLLQLPAMPDLKHHNLSTEGFTPLEDISLDEIKYKDKSREKQRKKNLQAKKAAE
QQQKVQKPKAASTTTATVMRKKTARQRRAAQSVEDDDEMAQEYRLLKKLKRGAINESEFA
KLTGTEDLL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgataaagacgcaaaccattcgacagccccgcaaaaacaaaaacagacagaccatggcg
tccgcccaaggttccaaccgaaacagagccttaaccgacactaggttctccgacctcaaa
cccccactctcccagcccgttcttgatgcccttactaattccggttttgatttctgtacg
ccggttcaggccgccactatacccttgctctgcagctacaaagacgttgccgttgacgcc
gccaccggttccggcaaaacccttgcattcctcgttcctctcgtcgagattctccgccgc
tcctcttcccccaaacctcatcaggtacttggtctaatcatatcacccacgagggaattg
tcatcgcaaatataccatgttgcacagccattcatctccacgttgtcaaatgtaaagtct
gtgcttcttgtcggcggggtagaagtaaaatcggacgtgaggaaattagaagaagagggt
gcaaatttattgattggcactcctggcaggctctttgacataatggagcgtatggacttg
ttggattttcggaatcttgagattctcattttggatgaggctgacaggctgttggatatg
ggattccagaagcagataaatgccatcatatcacgcttaccaaagcttcgtagaactggt
cttttttcagctactcaaactgaagctgttgaagagctttccaaggcaggattaagaaat
cctgtaagggttgaggttcaagcagaaatgaaaatgctagacaatccaacatcctcccaa
caacaggcaccatcaaaaacaccttctggccttcacattgagtatctggagtgcgaagca
gataagaaaccatcgcagcttgttcaactccttactcagaacatgtctaagaagattata
atttattttatgacctgtgcttgtgtggattactggggagttgttcttcctcaaatatct
gctctaaagcgtttatctataatctcacttcatggaaagatgaagcagactgcaagggaa
aaagcgttggcttcattcacatctctggcaagtggcgtccttctatgcaccgatgtagct
gcacgtggtcttgacattcctggagttgattgcatagtacagtatgacccccctcaggat
ccaaatgtgtttattcatagagtaggacgaacagctaggttgggacggcaaggaaatgct
attgtgtttttgttaccaaaggaggaagcatatgttgagttccttcgagtaaggagggtt
ccacttgaagagagagaaagcccagatgatgtttgtgatattgtcccacagataaggtca
gctgcaaaaaaggatcgtgatgtcatggaaaaagggcttagagcttttgtttcctacatc
cgtgcatacaaagagcatcactgctcctatatattcaggtggaaagaacttgagattggg
aaattgggtatgggttatggcttattgcagctccctgcaatgcctgacctgaagcatcac
aatctttctactgagggttttacaccacttgaagatataagccttgatgagatcaagtac
aaggataaatctcgtgagaaacaaagaaagaagaacttgcaggcaaaaaaagcagctgaa
caacaacagaaggtacagaagccaaaagcagcctcaaccactacagccactgtaatgagg
aagaaaacagccaggcaaagacgggctgctcaatcagttgaggatgatgacgagatggca
caggaataccgcttattgaaaaagctaaaaaggggtgctataaatgaaagtgaatttgcg
aaattgactggaactgaagatttgctttga
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