KEGG   Coffea arabica (coffee): 113730436
Entry
113730436         CDS       T11342                                 
Name
(RefSeq) protein NEDD1 isoform X1
  KO
K16547  protein NEDD1
Organism
carb  Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:carb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:carb03036]
    113730436
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:carb04812]
    113730436
Chromosome and associated proteins [BR:carb03036]
 Eukaryotic type
  Centrosome formation proteins
   Pericentriolar materials (PCM)
    Other PCM proteins
     113730436
   Microtubules and associated factors
    gamma-tubulin ring complex
     113730436
Cytoskeleton proteins [BR:carb04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Gamma-tubulin complex components
     113730436
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR3_2nd Beta-prop_EML WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_IFT122_1st WD40_Gbeta Beta-prop_SCAP NBCH_WD40 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_DCAF12 Ifi-6-16
Other DBs
NCBI-GeneID: 113730436
NCBI-ProteinID: XP_027110911
UniProt: A0A6P6W8I9
LinkDB
Position
2e:6076133..6082645
AA seq 797 aa
MNPTDSIKILLAASGGDTVKLFDVSVEPRDPCILSYAPSPGFQVNSIKWNHTNLVVASAG
DDKKISLYRKNGQNLGTIPLAGTDSGDNIEESISTINFSNKASRYICSGGSGQVVRIWDL
QCKRCIKWLKGHSDTITGVIYNCKDEHLASISLNGDLMLHNLASGAKAAELKDPNEQVLR
VLDYSRISRHLLVTAGDDGSIHLWDTTGRSPKVSWLKQHSAPTSGVSFSPSNDKIIATVG
LDKKLYLFDSGSRRPSFCIPYEAPYSSLSFTDDGLTLAAGTSNGRVVFYDVRGKPQPLTV
LRAYGNSEQAVTSLCWQRSKPVIVNESNCTTESALLGGAVEDSILMPDPLPSASTGTSVS
TTASVPRNSGRLGTLTDSFSFLSGSGASTSSTPDISTADETPLRSSLWTGGNLARLHAPR
SYNIKDDMEVFSPLVEVQPITPSLDKFWDENEGMKKDRDKKPSLVFPSSKRFPFCEDGGS
DMHPISDWKSSSISKQDDAYSTFAQFASTPTASSRSTDASSITPPEAWGGEKISDKLSQL
RQSVNMPSRFATLNSSNVTSGSMFSGLQDVTLTTSQTMGSLISSSLGLANLRVRETSTQE
ASFGSSEHVSYTSSSLTQAMRSSISQASLDSLGPSLSLPRRFSSYAERISTAPSFTDGTS
LSVGSPKTKKTGAETREELVNSWLARSDKLSTSEAGVLPAMNGGVLQSLRPTVQPDSQQG
SSFTLQLFQRTLEETLSSFQKSIHEDMRNLHIEILRQFHMQEVETSSVMRLILENQAELM
KEVQSLRKETQQLRQLL
NT seq 2394 nt   +upstreamnt  +downstreamnt
atgaatccgacggattcaataaaaattctcttggccgccagcggcggagacaccgtcaag
ctctttgacgtctcggtggagcctcgagatccctgcattctcagctatgctccttctcca
ggcttccaggtcaactctatcaagtggaaccacaccaatttggtggtggccagtgctgga
gatgataagaaaatttctttgtatagaaaaaatgggcagaacttggggactattccactg
gcaggtaccgatagtggcgacaatattgaggagagcatatccaccataaattttagcaat
aaagcttctagatatatttgttctggaggcagtggtcaagttgttagaatatgggatttg
cagtgcaaacgttgcatcaaatggttgaaaggtcattctgataccataactggtgtaatc
tacaactgtaaagatgagcacttagcttctataagtcttaatggtgatcttatgcttcac
aatcttgcttctggtgcaaaggctgctgaactaaaggatccaaatgaacaggttctgaga
gtgcttgattattctaggataagcaggcaccttttggttacagctggtgatgatgggtct
atccacctctgggataccactggtcgcagtcccaaggtctcctggttaaagcaacattct
gcacctacttctggtgtcagtttctcaccatcaaatgataagataattgctactgttggt
ttggataagaagctgtatttatttgactcgggttctaggagaccttcattttgcattccc
tacgaggcaccttattcttccctgtcattcactgatgatggattaacactggcagctgga
acaagcaatggcagggtagtcttttatgacgttcgtggaaaaccacaacctttgacagtt
cttcgtgcttatggcaattcagagcaggctgtcacaagtctatgttggcaaagatcaaaa
cctgtaattgtaaatgaaagcaactgcactactgaatctgcacttctggggggtgctgtt
gaggactcaattcttatgcccgatccacttccttctgcatctacaggaacttcagtctca
accacagcttcagtgcctcgaaattctggtcgtttgggtactttaacagactcattttcc
tttctgtcgggcagtggtgcatctacatcaagtacacctgatatatccacagcagacgaa
acaccgctcagaagcagcttatggacagggggaaatttggcaagattacatgcacctcgt
agttataatatcaaggatgatatggaggtcttttctccgcttgtggaagtacagcctatt
actccttcacttgataaattctgggacgaaaatgagggtatgaaaaaggatcgtgataag
aaaccatctttggtctttccatcttcgaagagattccctttttgtgaggatggaggtagt
gatatgcatccaatatctgactggaaatcttcttcaatttccaagcaggatgatgcctat
tccaccttcgctcagtttgcgtctacccctactgcatcttccaggagtactgatgcttca
tcaattactcctccagaagcttggggtggtgagaagatttcagataaactcagtcaactc
cgtcaatcagttaatatgccttcacgttttgcaacactgaattctagcaatgtgacatca
ggatcaatgttttctggattacaagatgttactttaaccacaagccagactatgggctct
ttaataagctcgagtctaggcttggcaaacttgcgtgttagagaaacctccactcaagag
gcttcatttggatcttctgaacatgtttcctatacttcatcgtctcttactcaagctatg
agaagcagtataagtcaggctagccttgattctcttggtccttcattgtcccttccacga
aggttttctagttatgcagaaaggataagcactgctccatcatttacagatggaacatct
ctttctgtgggttctccaaaaaccaagaaaacaggagctgaaacaagggaagagcttgtg
aatagctggttggccaggtctgacaaattatcgacgtcagaagctggggttcttccggcc
atgaatggtggggttttgcaatcattgaggccgacagtgcagccggactcacagcaggga
agttcatttacgctgcagctgtttcaacgtacccttgaagagactctttcttcgtttcag
aaatccattcatgaagatatgagaaatcttcatatagaaattttaagacaatttcatatg
caggaggtggaaacatcaagtgtgatgaggttgatcctggaaaaccaggcagagcttatg
aaagaagttcaatcacttaggaaggaaacacagcaacttcggcaattattatga

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