Coffea arabica (coffee): 113730563
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Entry
113730563 CDS
T11342
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113730563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113730563
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
113730563
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
113730563
NCBI-ProteinID:
XP_027111107
UniProt:
A0A6P6WAK1
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Position
2e:7280921..7286795
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AA seq
876 aa
AA seq
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MDRRRRDSDHDRDPHKHHRSSKDKSRDAADDDRRHHSHRRSKHRDEDDDRNRSERRSSRE
YSLDRDKSVEPRNEERSDDRRKREKSYEREDSVERKHTKRKERGESEEYGERDYDGGTKR
TRVLEERKEKRRLEDDMNGREKEEKKERRRFEDAVEGKEGREERRERRRFEDKVKKEQEG
MEVERIEGRFEERVGKKEPKDELPDNGDLGAGDSVANGGAMESFEMTSTTLPESHLYHNH
SPATKVSSISTTNENKGVNINRSHEVPGKSSTDGTASDAGKLGGLSRDALDKAKRALKMQ
KELAEKLRKIPLLNKATGATRESTPQLGPNEGHIAPSSSSGILPTPAASVRSSSMVTSGA
TPNASTLPAAAAASIGLPHLPGLNHERFEAVKKAQELAAKMGFRQDPEFAPLINMFPGQM
PPEVSIQPKPAKAPVLRLDALGREIDEHGNVVNVPKVNSLSTLKVNINKQKKEAFQILKP
ELEVDPEKNPHFDPSMGINKNKILRPKRMTFQFVEEGKWSKDAEIIKLKSQFGEARAKEL
KAKQAQLAKAKAEPDINPNLIEVSERVIIKEKQKETIPETEWWDVPILQSGSYGHTSDGN
LPMEKLKMEKITIYVEHPRPIEPPAEPTPPPPQPLKLTKKEQKKLRTQRRLAREKDKQEM
IRQGLLEPPKPKVKMSNLMKVLGSEATQDPTKLEMEIRSAAAEREQAHIDRNIARKLTPA
ERREKKERKLFDDPDKAEIIVSVYKVNYLSHPQARFKVDANAHENRLTGCAVISDGISVV
VVEGCPKSIKRYGKLMLRRIDWAAAVKNEGEDEDEDDGETPANKCMLVWQGSVVKPSFNR
FSIHECRTEAAARKIFSDAGVSHYWDLAVNFTEDQI
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggatcggagacgccgggattctgatcacgatcgagacccccacaaacatcaccgaagt
tctaaagataagtccagagacgcagccgatgacgaccgccgccaccacagtcatcgtcgt
tcaaagcaccgcgatgaagatgatgaccggaatagatccgaacggagatcgtcgcgagag
tattctttggatagagataagtcagttgagccgaggaatgaggagaggtctgatgatcgc
cgtaagcgggagaagtcctatgagagggaggattcagtggagaggaagcacactaagagg
aaagagagaggggagagtgaggagtatggggagagagattatgatggaggaaccaaaaga
actagggttttggaggagaggaaggagaagagaaggcttgaggacgatatgaatggaaga
gagaaagaagagaagaaagagcggcggagattcgaggatgctgtagaagggaaggaaggt
agggaggaaaggagagagaggaggaggtttgaggataaggtgaagaaagagcaagaaggg
atggaagttgaaaggatagaagggaggtttgaagagagagttggaaagaaagagccgaaa
gatgagctccccgataatggcgatctcggtgctggtgattctgttgctaacggtggtgca
atggaatcatttgagatgacatcgaccactttgcctgaatcccatttgtatcataatcat
tctcctgctaccaaggtatcttcaatttctaccacaaatgaaaataagggagttaatatt
aacagatctcatgaggttcctgggaaatccagtacagatggaacagcttcagacgctgga
aagcttgggggcttgtctcgtgatgctttagataaagcaaaaagagctcttaagatgcag
aaggagcttgcagaaaagcttaggaagatccctttgttaaacaaggctactggggcaact
agagagagtactccgcagttgggaccaaatgagggtcacatagctccttctagtagttca
ggaatacttccaactcctgctgcatcggtaagatcttctagcatggtaacatctggagca
acgccgaatgcttcaactttacctgctgctgcagctgcttcaattggtttgcctcatctt
cctggactcaatcatgagagatttgaagctgttaaaaaagcccaagagcttgctgctaaa
atgggatttcgacaggatccagaatttgctcctcttattaatatgttccctggacagatg
ccaccagaggtttcaatccagccaaagcctgccaaagcacccgtgctacgtttggatgct
ttgggaagggaaatagatgaacatgggaatgtagttaatgtgcctaaagtaaatagtttg
agtacactgaaggtcaacatcaacaagcagaaaaaagaagctttccagattctgaaacct
gagttggaagttgatcctgagaaaaatcctcattttgatccaagtatgggtattaacaaa
aataagattttgaggcccaagagaatgactttccagtttgtggaggaaggcaaatggtcg
aaagatgcagagataattaagttaaagagtcaatttggagaagctcgagcaaaagagttg
aaggcaaagcaagcacagttggctaaggccaaggctgagcctgatataaatcctaatctg
attgaagtgtcagagagggtgataatcaaggagaagcagaaagaaactattccagaaact
gagtggtgggatgtgcctattctacagtctggtagttatggccacaccagtgatggtaac
ttaccaatggagaaactcaaaatggagaaaatcaccatctacgttgaacaccctcgtcca
attgagcctcctgctgaaccaacaccgcccccacctcaacctttaaagctaacaaagaag
gagcagaagaaacttcgcacccagcggcgtctggcaagggagaaagataaacaggagatg
attaggcaaggcctcctagagcctccaaaaccgaaagttaaaatgagcaatctcatgaaa
gttctaggatcggaagctacccaagatcctaccaaacttgaaatggaaatcagaagtgct
gcagctgagcgcgaacaagctcatatcgacagaaacattgcacgtaaactcactcctgct
gagcgtcgtgaaaagaaagagaggaagctttttgatgacccagataaggcagagataata
gtctctgtttacaaagttaattatctgtcacatccacaagctcgttttaaggttgatgct
aatgctcatgagaaccgattgactggatgtgctgtaatttctgatggtatcagtgttgtg
gtcgtggaaggttgccccaaatcaatcaagagatatgggaagcttatgctaaggcgcata
gattgggcagcagcggtgaaaaatgaaggggaagatgaagatgaagacgatggtgaaaca
cctgctaacaagtgcatgttggtgtggcaaggtagtgttgttaaaccaagttttaatagg
ttttctattcatgaatgccggactgaggctgcagctcgcaagattttttctgatgctggg
gtttctcactattgggatctcgcggtgaacttcacagaggatcaaatttaa
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