Coffea arabica (coffee): 113730884
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Entry
113730884 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113730884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113730884
03041 Spliceosome [BR:
carb03041
]
113730884
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113730884
Spliceosome [BR:
carb03041
]
Complex B
Other components
Prp19-related factors
113730884
Complex C
113730884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_15
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
113730884
NCBI-ProteinID:
XP_027111656
UniProt:
A0A6P6WAN6
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All DBs
Position
2e:complement(10558803..10564526)
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AA seq
928 aa
AA seq
DB search
MAVVAPAPAPSAIIPQELYPADEDLAYEEELLRNPFSLKLWWRYLIARSEAPFRKRAIIY
ERALKALPGSYKLWHAYLRERLELVRNLPITHSQYQSLNNTFERALVTMHKMPRIWIMYL
ESLTNQKLVTKTRRAFDRALCALPVTQHDRIWAPYLFFVSQKGIPIETSLRVYRRYLKYD
PGHIEDFIEFLLNSELWQEAAERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHALDIS
GLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRKLVEKARDIFEEGMTTVVTVRDFSVIF
DAYSQFEESMLALKMEEMSDSELDDEEDSNETMGGEEEEEEDDRLDIRKLEKKLKTFWLN
DDKDVDLRLARLEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAV
RTVDPMKAVGKPHTLWVAFAKLYETHKDIANARVIFDKAVQVNYKNVDHLASVWCEWAEM
ELRHKNFKGALDLMRRATAEPSVEVKRRVAADGNEPVQMKIHKSLRLWTFYVDLEESLGT
LESTRAVYERILDLRIATPQIIINYAMLLEDHKYFEDAFKVYERGVKIFKYPHAKDIWVT
YLSKFVKRYGKSKLERARELFEHAVEVAPAEVVKPLYLQYAKLEEDCGLAKRAMRVYDQA
TKAVPAAEKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKVMCLRYAELEKSL
GEVDRARALYKHASQFADPRSDPDFWSKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTH
FILPEYLMQKDQMQTLEEAKDVLKKAGVADDQMAALEKKLLPSANDAVTKDSNRVLGFVS
AGVQSVGDGAPKDTENKEDIELPEESDSEDDDKVEIAQKDVPNAVFGGLIRKREETDNPE
NGDDAAAGKDEDEGHLGALARFKRSRNA
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcagtggtggcgccggcgccggcgccgtcggcgattataccccaggaactctacccg
gctgatgaggatttagcctacgaagaagagctgctccgcaacccgttcagtttgaagctt
tggtggcgttacttgatagccagatccgaagccccatttcgaaaacgggccataatttat
gagcgagccctaaaagccctgcccggaagctacaagctatggcatgcctaccttcgcgaa
cggcttgagctggttaggaaccttccaattactcattctcagtatcaatctctgaataat
actttcgaacgggcccttgttacaatgcataaaatgcctcgcatttggattatgtactta
gagtctttaactaatcagaagctcgtgaccaaaactcgtagggcttttgatcgggcgctt
tgtgcattgcccgttactcagcatgatcgaatatgggctccttatttatttttcgttagc
caaaaggggattccgattgagacatcgcttagagtttatcgtaggtatttgaagtatgat
cctggccatattgaggattttatagagtttttgttgaattctgagctgtggcaggaggct
gcagagaggttggctggggttctgaatgatgatcagttttattcgataaagggcaagaca
aaacacaggctgtggttggagttgtgtgatttgttgactcagcacgctttggatatctct
gggttgaatgtggatgcaatcattagaggtgggattaggaagtttacggatgaggttgga
aggttgtggacatcgctggctgattattatattcggaggaagttggtggagaaggcgagg
gatatttttgaggaaggcatgactacagtggtgacggttagggattttagcgtgattttt
gatgcttattcacagtttgaggagagtatgcttgctttaaagatggaggagatgagtgac
agtgagctggatgatgaggaagatagtaatgagactatgggtggggaggaggaagaagaa
gaggatgatcgtttggatataagaaagttggagaagaaacttaaaacgttctggttgaat
gatgataaggatgtggatttgaggttggcaaggttggagcacttgatggacagaagacca
gaactggcaaacagtgtgctgcttagacagaatccacataatgtggagcagtggcatagg
agggttaagctttttgagggtaatcccacgaagcagatattgacttacacagaagcagtt
aggactgttgaccccatgaaggctgtagggaagccacatactttatgggttgcatttgcg
aagctttatgagacccacaaggatattgcaaatgccagggtgatttttgacaaggcggtg
caggttaattacaagaatgtagatcatttggctagcgtctggtgtgaatgggcggagatg
gaactcagacacaaaaactttaagggtgctttggacttgatgaggcgtgcaactgcagag
ccatcagttgaagtcaaacgaagagtggcagctgatggaaatgaaccagtgcagatgaag
attcacaaatccctaagactttggacattttatgttgacttggaggaaagcctgggaacc
ttggagtccactcgtgcagtttatgagaggatattggatctgaggatagccacaccccaa
atcataataaactatgctatgctgttagaggatcataagtactttgaggatgcattcaaa
gtttacgagagaggtgtgaagattttcaaatatccacatgcaaaggatatatgggttact
tacctatccaaatttgttaagagatatgggaagtcaaaactagaacgagctcgagaattg
tttgagcatgcggttgaagtggcccctgcggaggttgtaaagccattatatctacaatat
gccaagttggaagaggactgtggtcttgcaaagagagccatgagggtttacgatcaagct
acaaaggctgttccagcagctgagaaattaagcatgtatgaaatctacatagctcgtgca
gctgaaatttttggtgttccgaaaacaagggaaatatatgaacaggcaattgaatctggt
ctacctgacaaggatgtgaaggtcatgtgcctgaggtatgctgagcttgagaagagcctt
ggagaagttgatcgtgctcgtgcactatacaagcatgcatcgcagtttgctgacccaaga
tctgaccctgacttctggtcgaagtggcatgagtttgaagtgcagcatggtaacgaagac
accttccgtgagatgcttcgtgttaaaaggagcgtttctgcaagctatagccagactcac
tttattcttcctgagtacttgatgcaaaaggatcagatgcagactcttgaggaagcaaag
gatgtgctaaagaaggctggggttgctgatgatcaaatggcagctctagaaaagaagttg
ttgccatctgctaatgacgctgtaactaaagattccaatcgcgtgcttggctttgtaagt
gctggtgtacagtccgtgggtgatggagcacctaaggatacagaaaataaggaggatatt
gaactacccgaggaaagtgactctgaagatgatgacaaggttgagatagcacaaaaagat
gttcctaatgctgtatttggaggtctgatccggaaaagagaagagactgataaccctgaa
aacggtgatgatgcagcagcaggaaaagatgaggatgaaggtcaccttggagcccttgca
agatttaaaagaagtcgaaacgcttaa
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