Coffea arabica (coffee): 113730958
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Entry
113730958 CDS
T11342
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113730958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113730958
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113730958
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113730958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
AAA_22
DEAD
AAA_19
nSTAND3
AAA_30
T2SSE
AAA_23
ABC_tran
AAA_16
SRP54
TsaE
Motif
Other DBs
NCBI-GeneID:
113730958
NCBI-ProteinID:
XP_027111767
UniProt:
A0A6P6W8N7
LinkDB
All DBs
Position
2e:complement(11521024..11526497)
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AA seq
975 aa
AA seq
DB search
MASSELNLYQKQESVATMSTRKHNNCALLGDNDEYQNQIDRGGVGINSVPKDMEMGKEGT
SRKRFRKRTEIKEDADSDSQDERLVRSQICKDRSDGSDMEEEERIRDRRERELEKNYKER
DAARTRELAAVHKSTRKEGNGAVQGSNAVKMDHIMMLREVSRQKYLKKREQDKVEELGDD
IQDEQYLFEGLKLTEAEHCDLRYKKELYGLVKKSSEEADSVKEYRMPESYDQEGSINQDK
RFSAASKCHRDPNAENTGKPFAEQEAWEQNQRGKAILKFGSRDRKQRGDEYEFVFDNQIE
FIKAAVMDSMNDEQESVIEPTEKSGGRSAFDVLQEERKALPIYQYREELLQAVNDHQVLV
IVGETGSGKTTQIPQYLHEAGFTKVGKIGCTQPRRVAAMSVAARVSQEMGVKVGHEVGYA
IRFEDCTSKKTVLKYMTDGMLLRELLGEPALASYSVLMVDEAHERTLSTDILFGLVKDIA
RFRPDLKLLISSATLDAEKFSDYFDFAPIFKIPGRRYPVDIHFTKAPEADYLDAAVVTAL
QIHLTQPPGDGDILIFLTGQEEIETVEEILKHRLQGFGAKIAELIICPIYANLRTELQAK
IFKPTPQGARKCVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVAPISKAS
ADQRAGRSGRTGPGKCFRLYTAHIYYNDLEDNTVPEIKRSNLSNVVLTLKSLGIHNLLNF
DFMDPPSTEALLKALELLYALGALNKHGELTKVGRRMAEFPLDPMLSKMIVASEKYKCSE
EIISIAAMLSVGNSIFYRPNNKKVLADNARMYFHVGNSGDHIALLNVYNSWKETDYSTQW
CHENFIQVRSMRRARDIRDQLKRLLERVEIALTSNLNDLEAIKKAITSGFFPNSAVMQKN
GLYRTVKLPQTVYIHPSSGLLQAPPSWVIYHELVLTSKEYMRQVTELKPEWLVEIAPHYF
QLKDVAYPDSKKAAV
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtctgagctgaatttgtatcaaaagcaagaaagtgtggcaacaatgtcaact
aggaaacacaacaattgtgcccttttgggagataatgatgagtaccagaaccagattgat
agaggaggagttggtataaattcggtgcctaaggatatggagatggggaaagagggtacc
tcaagaaaaaggttcagaaagaggacagaaatcaaagaggatgctgattctgattctcaa
gatgaaaggttagttagaagtcagatttgcaaggatagaagtgatggctctgacatggaa
gaggaagaaagaattcgtgatcgaagggagagggagttggagaagaattataaagaaagg
gatgcagcacggactagagagttggctgcagtgcacaagtcaacaaggaaggagggaaat
ggggcagttcaggggtctaatgctgttaagatggatcacattatgatgctaagggaagtt
tcgaggcaaaagtatttgaagaaaagggagcaagataaagtagaggaacttggagatgat
attcaagatgagcagtatttatttgagggcttaaaactcacagaagcagagcattgcgat
cttagatataagaaagaattgtatgggcttgttaagaagagttctgaagaggcagatagt
gtaaaagagtacaggatgccagaatcctacgatcaggaagggagtataaatcaggacaag
agattttctgccgcttccaagtgccacagggatcctaatgctgaaaatacggggaagccc
tttgctgagcaagaagcatgggaacaaaatcaaagggggaaggcaattctcaagtttggg
tcaagagatagaaaacaaagaggtgatgaatatgagtttgtatttgataaccagattgaa
ttcataaaggcagcagttatggatagcatgaatgatgaacaagaatcggttattgagcca
actgaaaaatctgggggcagatcagcatttgacgtgcttcaggaggagcgaaaagctcta
cctatttatcagtatagagaagaattgcttcaggctgtaaatgatcatcaggttcttgtt
atcgtcggggagacgggttctggaaagacaacccagattcctcaatatctccacgaggca
ggtttcacaaaagttggaaagattgggtgtacccagccacgccgagttgcggccatgagt
gttgctgctcgagtttctcaggaaatgggagtcaaagtcgggcatgaggttggttatgcc
attcgttttgaggactgtacttccaagaagaccgttctgaagtacatgaccgatggcatg
ttattgagggagttgcttggtgaacctgctcttgcaagctacagtgtcttgatggtggat
gaggctcatgagagaacattatcgactgatatactatttggcttggttaaggacattgct
cgttttcgacctgatcttaagttgctcatctcaagtgccacactagatgctgagaagttc
agtgattactttgattttgctccaattttcaaaatacctggaaggaggtatcctgttgac
atccatttcaccaaagcaccagaggcggattacttggatgctgcagttgtcactgcctta
caaatccatctgacacaaccacctggggatggtgatatattgattttcttaactgggcag
gaagaaattgaaactgtcgaggagatcctgaagcataggctacaaggttttggagcaaaa
attgcagagctgatcatatgtccaatttacgcaaacctacgaacagagttgcaggcaaaa
atattcaagcccactcctcaaggggcacgcaagtgtgtcctggcgacaaatattgctgag
acttcattgacgattgatgggataaagtatgttatcgatccaggattttgcaaaatgaag
tcttacaatccccgaactgggatggagtcattattggttgctcctatctcaaaagcatct
gcagatcaacgggctggtcgatctggacgaacgggtccaggaaagtgctttagactgtac
actgcacacatttactacaacgacttggaagataataccgtcccggagataaaaaggagc
aacctatcaaatgttgtgcttactctcaagagcctcggcattcataacttgttgaacttc
gactttatggatccaccatcaacagaagctttattgaaagccctggaacttctttatgca
ctaggtgcgctaaataagcatggtgagctgacaaaggttggtagaagaatggcagagttc
cctcttgatccaatgctttccaagatgatcgtagcttctgaaaagtataaatgcagcgag
gaaatcatatctattgcagcaatgctctctgtaggaaattcaatattttatcgtccaaac
aacaaaaaagttctcgctgataatgcaaggatgtatttccatgtagggaattccggggac
catattgcattacttaatgtctacaactcttggaaggaaacagactattcaacacaatgg
tgtcatgagaatttcatacaagtcagaagcatgaggcgtgcaagagatataagagatcag
ttgaagaggttgttggaaagagttgaaattgccttgacatcaaatctcaatgacttagaa
gctattaagaaggccataacttctgggttttttcctaattcagcagtcatgcaaaagaat
ggactatatagaactgtaaaactgccccaaactgtatatatccaccctagttcaggctta
ctgcaagcgcctcctagctgggtaatctaccatgagttggtcttgacgagcaaggagtac
atgagacaggtgactgaattaaagccagagtggctggtggaaatagctccccactatttt
cagttgaaagatgttgcctatcctgattcaaagaaagcagccgtgtga
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