Coffea arabica (coffee): 113731257
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Entry
113731257 CDS
T11342
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
carb03016
]
113731257
Enzymes [BR:
carb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
113731257
Transfer RNA biogenesis [BR:
carb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
113731257
Prokaryotic type
113731257
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
113731257
NCBI-ProteinID:
XP_071936191
UniProt:
A0ABM4WWN5
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Position
1c:complement(55820099..55825182)
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AA seq
538 aa
AA seq
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MAVIPLRLPLSPWLAARAAPTTLQFFNPNKPLKPFLLRFSTSAAASDAAAQDSVPLPPSS
SPSPPPQNKWEPFRKKKVVMRVGYVGSDYRGLQMQRDEHALPTIEGELEKALHKAGGIRD
SNFGDLQKIAWARSSRTDKGVHSLATMISFKMEIPENAWKDDPNGIALANYVNSFLPENI
CVFSILPSQRSFDARRECDVRKYSYLLPAEIIGIRNEFTAAEVDLHLSEFNGFLNSFEGE
HPFHNYTIRAKYRKQLRTRSSNICDKGARSSDEEAACEHEGSDGDLVSEGKEVDTVDESD
GVEPIDGQKVVPELVKRIYDSSPSFCESPSSSYGEDGRNLKKQNSALPIARWLYEPDARD
KLSAAHFRKIFQCYCGKLERMCGMNYVEIWICGESFMLHQIRKMVGTAVAIKRKLLPVDV
LQLSLSKFSRIVLPLAPSEVLILRGNNFALRKRPGKETRPEMLTLLESEEIVTAVDEFYH
SVMLPQVATFLNPSKYPWNDWVNTLDANTSIPEFQLAEVRTAWKLWKEKPENKIKALL
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggcagttattccattacggcttccgctatcaccgtggctggctgcgcgagcagctcca
acaaccctccaattctttaacccaaacaagcctctcaaaccatttcttcttcgtttctcc
acttcagcagctgcctccgatgccgccgcccaagactcagtccctctgcctccctcttct
tctcctagccctcctccccaaaacaaatgggagccctttcgcaaaaagaaagtggtaatg
cgcgttggttatgtagggtccgattatcgaggtcttcaaatgcaaagggatgaacatgca
ttacccactattgaaggtgaactggagaaggcacttcataaagctggcggaattcgtgat
agtaactttggagacttgcagaaaattgcttgggcaagaagtagcaggactgataaagga
gttcattcgctggctacgatgatatcttttaaaatggaaatccctgaaaatgcttggaag
gatgaccccaacggaattgctcttgctaactatgtcaactcatttcttccggaaaacatc
tgcgtgttcagcattttaccatcacaaaggagctttgatgccagaagggaatgcgatgtc
cgcaaatattcttatctccttcctgctgaaattattggcataaggaatgaatttactgct
gccgaagttgatttgcatttatcagaatttaatggattcctgaattcttttgagggagaa
catcctttccacaattatacaataagagccaagtataggaaacagttacgtaccagaagc
tctaacatatgtgacaagggagcaagatcatctgatgaggaagcagcctgtgagcatgaa
ggaagtgatggagatttagtttctgaagggaaagaagttgatacagttgatgaaagtgat
ggagttgagcctatcgatgggcaaaaagttgtgccagagttagtcaaaaggatttatgat
tcttcaccttctttttgtgaatctccatcaagcagctatggtgaggatggaagaaatttg
aagaaacaaaattctgctttgccaattgcacgatggttgtatgaacctgatgcgagggat
aaacttagtgctgcccacttcagaaagatttttcagtgttattgtggaaagttggagcgc
atgtgtggtatgaattatgtagagatctggatttgtggagaatcgttcatgttgcatcag
atacgcaaaatggttgggacagctgtggcaataaaacgaaaattacttccggttgatgtc
ctgcagttgtctctttcaaagttctcgcggattgttctacctcttgctccatctgaggtt
cttatattgaggggaaacaattttgctttgagaaaacgacctgggaaagaaacaaggcca
gagatgttgacccttcttgaatcagaagaaattgtcactgcagtggatgaattctaccat
tctgtaatgttacctcaggtggctactttcttgaacccttcaaagtacccttggaatgat
tgggtgaatactttagatgctaacacaagcatcccagaattccaactggcagaagtcagg
actgcttggaaattatggaaggaaaagccagaaaataaaatcaaggcgttgttgtaa
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