Coffea arabica (coffee): 113731373
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Entry
113731373 CDS
T11342
Name
(RefSeq) cleavage stimulation factor subunit 77-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113731373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113731373
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113731373
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_16
TPR_2
TPR_CcmH_CycH
Motif
Other DBs
NCBI-GeneID:
113731373
NCBI-ProteinID:
XP_027112409
UniProt:
A0A6P6WAY1
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Position
2e:complement(17141414..17152938)
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AA seq
736 aa
AA seq
DB search
MTTTDKYNVEAAELLANQASHLPISEAVPVYEQLLANFPTAAKYWKQYVEAHMAVNNDDA
VKHIFSRCLLNCLHIPLWRCYIRFIRKVNDKKGIEGQEETRKAFDFMLNYVGADIASGPV
WMEHTAFLKSLPTQNLAEETQRMTSVRKAYQKAIITPTHHIEQLWREYENFENSVSRALA
KGLLSEYQPKYNSARAVYRERKKFADEIDWNMLAVPPSGTSKEEMQWIAWKRFLAFEKGN
PQRIDSASANKRIAFTYEQCLMYLYHYPDIWYDYATWHAKSGSVDSAIKIFQRALKALPD
SEMLKYVYAELEESRGSIQASKKVYESLLGDDGNATALSHIQFIRFLRRTEGVEAARKYF
MDARKSPNCTYHVYVAYAMMAFCLDKDAKFAHNVFEAGLKRFMHEPSYILEYADFLSRLN
DDRNIRALFERALSSLPPEESVEIWKRFTQFEQTYGDLSSILKVEQRRKEALSRAGDEGE
SALDSSLQDVISRYSFMDLWPCSSKDMDHLTRQEWLSKNISKKIEKPTPANGVSSVDKSS
SAVSTTSNSVKVVYPDTSKMVVYDPRQKIGLTGPLQPGVPVALPPNDTMGAAGAPNVLKD
ILKTLPPALATFVANLPAVEGPSPDVDFVLAICLQSNIPLMPVRAANSTQLQTGPAPSTS
DLSGSSKFKPTRDRHAGKRKDVDKQDDEDSTTVQSQPLPRDAFKLRQLRKARGASSQTGS
ASYGSAFSGEMSGSTG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgacggataaatacaatgtcgaagcagctgagcttcttgctaaccaggcatcg
catttgccaatttcggaggctgtgccggtatatgagcaacttttggctaattttcctact
gcagcaaaatactggaagcagtatgttgaggctcacatggctgtaaataatgatgatgcc
gtaaaacatattttcagtcgctgcctgttgaactgcctacacattcctctttggcgctgc
tacatccgctttattaggaaggttaatgacaagaaggggatagaaggtcaggaagagact
aggaaagcatttgatttcatgcttaactatgtcggggcagacatcgcatctggtcctgtg
tggatggagcacactgcattcttaaagtccttgccgactcaaaatttggcagaagaaaca
caaaggatgacttctgtaagaaaagcatatcaaaaagccattattacacctacccatcac
attgagcaactctggagggagtatgaaaattttgaaaactcagttagccgtgccctggca
aaaggattgttgtctgaatatcagccaaaatataacagtgcaagggctgtttacagggag
aggaaaaagtttgccgatgaaattgattggaatatgcttgctgtgccaccatctggtact
tccaaggaagaaatgcagtggatagcatggaaaaggttcttagcctttgaaaaaggaaat
ccccagaggatagatagcgcttctgctaataaacgtattgcattcacatacgaacagtgc
ctcatgtatttataccactatcctgacatatggtatgattatgccacgtggcatgcaaaa
agtggctctgtagactctgcaatcaaaattttccagcgagctttgaaggctttacctgat
tcagaaatgctaaaatatgtgtatgcagagctggaagaatcccgtggctcgattcaggcg
tcaaagaaagtatatgaaagtcttcttggtgatgatggcaatgctactgctctttcacat
atacagtttatccgctttctaagaagaacagaaggggtagaagcagcacgtaaatacttt
atggatgcacggaaatctcctaactgcacttaccatgtttatgtagcttatgcgatgatg
gcattttgtcttgacaaggatgcaaagtttgcacacaatgtttttgaagcggggctgaaa
cgattcatgcatgagccatcatatatccttgaatatgcagattttctatcccgcttgaat
gatgatagaaatattcgggcattatttgagcgagcattaagctcactcccacctgaggaa
tcagttgagatctggaaaagatttactcaatttgaacaaacatatggagatctttctagt
attttgaaggttgagcaacgaaggaaagaggcactgtcaagggctggtgatgagggagaa
tctgctttggatagttcattgcaagatgttatatcacgctatagtttcatggacctgtgg
ccttgctcttccaaggatatggatcatttgactaggcaagagtggctttcaaaaaacatc
agtaagaagattgagaaaccaactcctgccaatggtgtcagttctgtagataagagttct
tcagcagtttctaccacttcaaattctgtaaaagttgtttacccagatacttcaaagatg
gtggtttatgatccaaggcaaaagattggtctcacgggtcctttacagcctggagttcca
gtcgctttacctcctaatgatacaatgggtgctgctggagcacctaatgtactgaaagat
attttgaaaaccttaccacctgcattggcaacttttgtagcaaacctgccagctgttgaa
ggtccatctcctgacgttgattttgttctagcgatatgtctgcaaagcaacataccacta
atgcccgtaagagcagcaaactctacacaactgcaaactggtcctgctccaagcacaagt
gacctatctggttcatcaaaattcaagccaacaagagatagacatgctggaaagagaaag
gacgtagacaaacaagatgatgaggacagtacaacagttcaaagccaacctcttccaaga
gatgcttttaaattacggcaattacgaaaggctcgtggtgccagttcacaaactggatcg
gcatcttatgggagtgcattttctggggagatgtctggaagcaccggttga
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