Coffea arabica (coffee): 113731456
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Entry
113731456 CDS
T11342
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
carb Coffea arabica (coffee)
Pathway
carb03020
RNA polymerase
carb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113731456
09124 Replication and repair
03420 Nucleotide excision repair
113731456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113731456
03400 DNA repair and recombination proteins [BR:
carb03400
]
113731456
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113731456
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113731456
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
RNA_pol_L_2
Motif
Other DBs
NCBI-GeneID:
113731456
NCBI-ProteinID:
XP_027112543
UniProt:
A0A6P6WAQ4
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All DBs
Position
2e:complement(17769988..17773685)
Genome browser
AA seq
319 aa
AA seq
DB search
MEGRSYQRFPTVKIRELKNDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCLNDQTLDV
TSRELISSDPSVVPVDFASPSSEYDNAENRGIMIVKLRRGQELRLRAIARKGIGKDHAKW
SPAATVTFMYEPEIYINEDMMEKLTLEQRMSVVESSPTKVFDIDAKTGRVVVVDPEAYTY
DDEVIKKCESLNAPGLVEVHPKEDSFIFTVESTGAIKASQLVLNAIDILKQKLDAVRLSE
DTVEADEQFLELDAHMRGG
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcagatcgtaccagaggtttccgacagtgaagattcgcgagctgaagaacgac
tacgccaagttcgagctccgcgacactgatgccagcatagccaacgcgctgcggcgcgta
atgatagctgaggttcccactatcgccattgacctagtggagatcgaggtgaactcttcc
gtcttgaacgacgagttcatagctcaccgactcggtctgattccactcaccagcgagcga
gccatgagcatgcgcttctcacgtgactgcgatgcctgtgatggcgacggccagtgcgag
tattgctccgtcgagtttcatctgagagccaaatgcctcaatgatcaaaccctagatgtc
accagcagggagctcatcagctctgatccatctgttgtccccgttgatttcgccagtcca
tcctcagaatatgataatgccgagaacaggggaattatgatagtgaaactacgccggggg
caagagttgaggctgagagctatagctcggaaaggtattggcaaggatcatgccaaatgg
tcacctgcagcaactgttacattcatgtatgaacctgagatttatatcaatgaagatatg
atggagaaattaacacttgagcagagaatgagtgtggttgaaagcagtcctaccaaagtc
tttgacattgatgccaaaactggacgggttgttgtggttgatccagaggcatatacctat
gatgatgaggtgatcaagaaatgtgaatccttgaatgcgccggggcttgtagaggtacat
cccaaggaagacagtttcattttcacagttgagtccactggtgcaattaaagcttctcag
ctggttcttaatgctatcgacattctgaagcaaaagctggatgcagttcgcttgtcggag
gacactgtggaggctgatgagcagtttttggaattggatgcacatatgcggggcggctga
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integrated database retrieval system
