Coffea arabica (coffee): 113731953
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Entry
113731953 CDS
T11342
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113731953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113731953
03041 Spliceosome [BR:
carb03041
]
113731953
03009 Ribosome biogenesis [BR:
carb03009
]
113731953
03016 Transfer RNA biogenesis [BR:
carb03016
]
113731953
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113731953
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113731953
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113731953
Complex C
U4/U6.U5 tri-SnRNP related factors
113731953
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
113731953
Transfer RNA biogenesis [BR:
carb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113731953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113731953
NCBI-ProteinID:
XP_027113303
UniProt:
A0A6P6WDD7
LinkDB
All DBs
Position
2e:21300835..21308735
Genome browser
AA seq
995 aa
AA seq
DB search
MGSVKRKSIENPIEGYDTPAEKQQKRGNELLNLDEPVACVHDVSYPEGYVPRASTSNLPD
KDAKPAKEFPFTLDPFQAEAIKCLKNGESVLVSAHTSAGKTVVALYAIAMSLQNKQRVIY
TSPIKALSNQKYREFKEELSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVA
WVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIV
YTDYRPTPLQHYIFPSGGNGLYLVVDEKGKFRENSFQKALNALVPPGEGDKKRENGKWQK
GLFVGKAGEDSDIFKMVKMIIQRQYDPVICFSFSKRECEFLAMQMAKMDLNNEDEKVNIE
TIFWSAMDMLSEDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDE
KLEPSTAKLMVKGSADSLNSAFHLSYNMLLNQIRSEDGDPVNLLRNSFYQFQADRAIPDL
VKQAKSLEEERDSIILEEEDSLENYYSLLQQFKSLKKDVRDIVLSPKYCLPFLQPGRLVS
IQLIKVDDNLPSFSVKDDVTWGVIINFERIKGLSEDDTNKKPEDASYTVDILTRCTVHKD
EAGKRTISIVPLKDPGEPAVVSLPISQIDSLSSVRLVIPKDLLPVEARENTLKKVSEVLS
RFAKDGLPQLDPEDDMKVQSSSYRKAVRRIEALENLFEKHEIAKSPLIEQKLKLLHTKKQ
LTAKIKSIKRTMRSSTALAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSADELT
LTELMFNGVLKDIKVEEMVSLLSCFVWQEKLQDAQKPRDELELLFTQLQDTARRVAKVQL
ECKVQIDVENFVSSFRPDIMEAVFAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQL
IQAAKSIGETELEAKFEDAVIKIKRDIVFAASLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgggatcagtaaaaaggaagtcaattgaaaaccctatcgagggatatgatacgcctgct
gagaagcagcagaagagaggtaatgaacttttgaatttggacgaaccagttgcctgtgtc
cacgatgtatcttaccctgaaggctatgttcctcgtgcttcgacctccaatttgcctgat
aaagatgcaaaacccgccaaggaatttccttttactctcgacccttttcaggcggaagca
attaagtgtctgaagaatggggaatctgttttggtatctgcgcatacatcagctggtaag
actgtggtggcattgtacgccattgccatgtcattgcagaataagcaacgggtgatatat
acttcaccaattaaggcactcagtaatcagaagtatagagagtttaaagaggagctttcg
gatgttggtttgatgacaggggatgtcactattgatcctaatgcttcttgcttggtaatg
acaacagaaatttggcgtagcatgcagtacaaggggtctgaggttacgagggaggtggca
tgggttatctttgatgaggtgcattacatgcgtgacagagaaagaggtgttgtatgggaa
gagagtattgttatggctccaaagaattctcgttttgtatttctctctgccactgtccct
aatgctaaggagtttgcagattgggttgcaaaggtccatcagcaaccatgtcatatcgtt
tatactgattatagaccaacaccacttcagcattacatcttcccttctggaggcaatggt
ctttacctagtggttgacgaaaaaggaaaatttcgtgagaatagttttcagaaagctcta
aatgctcttgttcctcctggtgaaggggataagaaaagggagaatggaaaatggcagaag
gggctttttgttggtaaagcaggcgaagacagtgacatatttaagatggtaaaaatgatt
attcagcgccaatatgatcctgtcatatgttttagcttcagcaaaagagaatgtgaattt
cttgcaatgcagatggctaaaatggatcttaacaatgaggatgagaaggtgaacattgaa
acgatattctggagtgcgatggatatgttgtcagaggatgataaaaagctgccacaggtc
tccaatatgctgcctctgttaaaacgtggaattggcgtgcaccattctggcttgcttccc
atactaaaggaagtgatagaaattctattccaagaaggcttaatcaagtgtttatttgcc
acagaaaccttcagtataggactgaatatgcctgcaaaaacggtcgtttttacaaatgtt
cgcaagtttgatggagataagtttagatggatatccagtggagagtatattcagatgagt
ggtcgtgctggtcgtagggggattgatgagcgaggaatttgcattcttatggttgatgag
aagctggaaccttctacagctaagttaatggtaaaaggaagtgctgatagtttgaacagt
gccttccacttgagctacaatatgcttctgaatcagatacggtctgaagatggtgatcct
gtgaatttgcttcgcaattccttctatcaattccaagcggatcgagccattcccgatctt
gtgaaacaagcaaaaagtcttgaagaagagagggattcaatcatactcgaggaagaagat
agcttggagaattactactctctactacagcaatttaagagtttaaaaaaggatgtgcgt
gatattgtcctctctccaaagtattgtttacccttcctgcagcctggcaggcttgtaagc
atccagctcataaaggttgatgataatttgccatcattttccgtcaaggatgatgtcaca
tggggggtcattatcaattttgaaaggataaaaggtctttctgaagatgatacaaataaa
aagcctgaggatgcaagttatacagtggatattcttacaagatgtacagtccataaggat
gaagctggtaaaagaacaatttcgattgtaccattgaaggatcctggggaacctgctgtt
gtttctcttcctatatctcagattgatagtttgagtagtgttcgacttgtaatacccaag
gatcttttgccagtggaagctcgggaaaataccctgaaaaaggtgtctgaagttctatct
agatttgctaaagacggactgcctcaattagacccagaagatgacatgaaggttcagagt
agctcatacagaaaagctgtacgaagaatagaggcccttgagaacctgtttgaaaaacat
gaaattgcaaaatctccacttattgagcaaaagctcaaacttttgcatacaaagaagcag
cttactgccaaaattaaatcaatcaagagaacaatgcgttcctcgacagccttggctttc
aaagatgaacttaaagcaagaaaaagagtgcttcggagactagggtacatcacaagtgat
gatgttgtcgagttaaaggggaaagttgcttgtgaaataagtagtgcagatgagttgacc
ctgacagagctcatgtttaatggggttctaaaggacataaaggtagaagagatggtgtct
ctgttgtcttgttttgtttggcaagagaaacttcaggatgctcaaaagcctagggatgag
cttgagttactttttacacaattacaagatacagctcggagagttgccaaggtccagctt
gaatgcaaggttcaaattgatgttgagaattttgtaagttcattccgtcctgatattatg
gaggccgtctttgcttgggccaaaggatcgaaattttatgagataatggaaatcactcag
gtttttgagggcagcttaattagggctatcaggaggctggaagaggttcttcagcaacta
atacaagcagcaaaatccattggagaaactgagcttgaagcaaagtttgaagatgcagtt
attaagataaagagggatattgtttttgcagcatctctctatttgtag
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