Coffea arabica (coffee): 113732107
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Entry
113732107 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
carb Coffea arabica (coffee)
Pathway
carb03030
DNA replication
carb03410
Base excision repair
carb03420
Nucleotide excision repair
carb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113732107
03410 Base excision repair
113732107
03420 Nucleotide excision repair
113732107
03430 Mismatch repair
113732107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
carb03032
]
113732107
03036 Chromosome and associated proteins [BR:
carb03036
]
113732107
03400 DNA repair and recombination proteins [BR:
carb03400
]
113732107
DNA replication proteins [BR:
carb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
113732107
DNA Replication Termination Factors
ELG1-RFC complex
113732107
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
113732107
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
113732107
Check point factors
HRAD17(Rad24)-RFC complex
113732107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCF1-5-like_lid
RFC_C
AAA_lid_RFC1
COMPASS-Shg1
RuvB_N
RsbU_N
Motif
Other DBs
NCBI-GeneID:
113732107
NCBI-ProteinID:
XP_071936234
UniProt:
A0ABM4WWT3
LinkDB
All DBs
Position
2e:24818098..24824088
Genome browser
AA seq
731 aa
AA seq
DB search
MPSPSIPRSKSAPRISTTPLSPSHSDVTSRWTSTSENSSRTWPKKVGNFIARKTGSSSSS
KKSILTEESLKEFNRLNEILEQKRHFSSSPYYKGLTYSSLVISRQRPSLPSPDTESNAGS
FMSSSSKTSFVYKMQEWGSSCFTSKDKEANISQPKSSSSNSKNSRDTITPIRSLSSSTLS
KQGSTPATTNTRYRCTKTAKELGSESEKLGSISTKITSTTSTDAAIAILNKGKPLRERVL
VPPSPPPTPPHPGPQIIPPAPAPTQILQPQPTLQPPQTSSRPTITPSQTSPTEKIVQEKE
TNKPENERKFMWADKYRPFALKDFISNHSKALELQATVKSENCSHFIFEGQPGVGKRTMI
WAFLREAFGEDRVEAREESRKFVLKGEAVSSINVNIKHSSMHVEINLSELRGYEKHVIVE
LIKEKSDKSSSEALQCNPDNCRGTARILFNESNSTTSNARQNDFPFFIHTYAAIILYEVD
KLPTEALLYIKWLLERYKGCNKLFFCCSDASKIHPLTSLCTLVQLLPPSTEEIIKVLEFI
AQQEGITLPHQLAAKIAKSSKNNLRQAIRSFEATWQFNSVLKENQEIMIGWEDDIAKIAR
NIIDEQSPKQLYNIRGKLQNLIEHNVSPEFIFETLVKELKKNLDEQLQKQIDNLHEKYNP
GVALIFLQKNDDCEKHYAPAPNRQEEMGKRLNDPVRKTVQQFMRIEEFIAKFMSWYKGLV
VKSKQMQAHAI
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgccgagtccttcgataccacgttctaaatctgctcctagaatttcaacaactcctctc
tctccctctcactcagatgtaacttctcgatggacatcaacgtccgaaaactcatctaga
acatggccaaagaaagttggtaacttcattgcaagaaagactggctcatcgtcttcatca
aagaaatcaatcctaactgaagagagcctcaaggaattcaacagactaaatgaaattcta
gaacagaaaaggcacttcagcagtagtccttactacaaggggctgacttactcatccctt
gttattagtagacagagaccttcactgccaagtcctgatacagagagcaatgccggaagt
tttatgagctcaagctctaaaaccagctttgtatataaaatgcaagaatggggaagttcc
tgctttacatccaaggacaaagaagcaaacatttctcagcccaaatcaagttcctctaat
agtaaaaactccagagacactatcacccctatccgatctctatcatcctctacattgtcc
aaacaaggttcaacacccgcaacaacaaatacaagatatagatgtaccaaaactgcaaaa
gagctgggctctgaaagtgaaaaacttggcagcattagcacaaaaattaccagcaccacc
agtactgatgctgctattgctatattgaacaaagggaagccattgagggagagagtatta
gtaccaccatcaccaccaccaacaccgcctcatccaggaccacaaatcataccaccagca
ccagcaccaacacaaattctacaaccacaaccaacacttcaaccaccacagacatcatcc
cgaccaacaataacaccatctcaaacttcaccaactgaaaagatagtccaggagaaagag
acgaacaagccagagaatgaaagaaaatttatgtgggctgacaagtatcgaccatttgcc
ctgaaggatttcatatccaatcatagtaaagcactagagctgcaagctacagtcaagtca
gaaaattgtagtcatttcatatttgaaggacagccaggggttggaaagagaacgatgatt
tgggctttcctccgtgaagcttttggagaagatagagtagaggctagagaggaaagcagg
aagttcgttctgaagggagaagcagtaagtagcatcaatgtcaatataaagcactcgtct
atgcatgttgaaatcaatctctctgaactaagagggtatgagaaacacgttattgtggaa
ctgatcaaagagaaaagtgacaaatcatcaagtgaggctttgcagtgcaatcctgataat
tgtagaggtactgcaagaattcttttcaacgaaagtaattctacaacatcaaatgccaga
cagaatgattttcctttctttattcatacttatgcagccataattctctacgaggtggac
aaacttccaactgaagccctactctatatcaagtggcttttagagcggtataaagggtgt
aataagctcttcttttgctgtagcgatgcctcaaagatccatccattaacttcactttgc
actcttgttcagctcctaccgccttctactgaagaaattattaaagtactggaattcata
gcacaacaggagggaattacgttaccacaccagttggctgccaagattgcaaaatcctcc
aagaacaacctaagacaagccatacgctcatttgaagcaacctggcaattcaattctgtt
ctgaaagaaaatcaagaaatcatgatagggtgggaagatgacatagcaaaaattgctaga
aatataatagacgagcaaagcccaaaacagctatacaatatccgtggaaagctccagaac
cttatagagcacaatgtatctccagagttcatatttgaaactctagtgaaagaactcaaa
aagaacttggatgagcaattacagaaacagattgacaatctacacgagaaatacaatcca
ggtgtggctttgatatttttgcagaaaaatgatgattgcgagaagcattatgcccctgca
ccaaatcgacaggaggaaatgggtaaaagactcaatgatccagtcagaaagactgtgcag
caatttatgagaatagaagagttcatagcaaaattcatgagctggtacaaaggcttggtt
gtcaagagcaagcagatgcaagcccatgcaatttaa
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