Coffea arabica (coffee): 113732469
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Entry
113732469 CDS
T11342
Name
(RefSeq) crossover junction endonuclease MUS81-like isoform X1
KO
K08991
crossover junction endonuclease MUS81 [EC:3.1.22.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
carb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113732469
03460 Fanconi anemia pathway
113732469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113732469
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
113732469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
WHD_MUS81
EME1-MUS81_C
HHH_8
DUF6429
Motif
Other DBs
NCBI-GeneID:
113732469
NCBI-ProteinID:
XP_027114045
UniProt:
A0A6P6WFX3
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Position
2e:34227458..34241728
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AA seq
683 aa
AA seq
DB search
MDFQLRSVCPENEDVAAFMKNKWQEMAANPKGISDNLNNTFYKAYSNVCNSKTPIKSLRD
LAEIKGVGKWILKLMQGFFDTSLGGSENEDAIKKGKRSKGTRRYVPQKNSVAYALLITLY
RGTTNGSEFMRKQELIDAAEASGLSRGPIVPEKGKGKPGKFGSSPREWYSGWSCMKTLIT
KGLVVKSSCPAKYMLTEEGKEAAKECLSRSGLVDCNDNSAIAHRSSCIEPKELDSSDMLR
FCGPEPKDIDSTEIDMPELASAQARSLNEVALTSFASNSEKKSFHIPSESLDRFVKMGYS
REQTTRAFLKASDASQTQDMSSLWPAVLCRLKEDQVYGLPIQPNITRVDDFAVGNSVSNI
HGNSFINGTCNGPLEGVKLPLLATSGQMACPLKACSFTDKEGTEALESKSHVLAMPPLDV
GERFEDTYGIILVLDDREHFASKGSQSRKIIDNISSQFKIQIEVRRLPVGDAIWIAHHKR
IGTEYVLDFVVERKKVDDLRLSIRDNRYKDQKLRLLRCGLKKVIYLVEGDPNSCEAAESI
KTACFTTEILEGFDVQRTNGLGETLRKYGHLTQAIYQYYKSLDSEHKSSRVCPQYREFIR
RCEDLDKLTVSDVFAIQLMQVPQVTEEVAIAVLEMFPTLRSLSLAYSVLDGDICAQEDML
KKQSNNLISSAASRNIFQLIWGG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggatttccagctaagaagtgtgtgcccggagaatgaagatgtcgcagccttcatgaag
aataaatggcaagaaatggcggcaaatcccaaagggatttctgacaatcttaacaatact
ttttataaggcttattctaatgtatgtaattccaaaactcccatcaaatccctccgagac
ttggcagaaatcaagggagtaggaaaatggattctgaagctaatgcaagggttttttgat
accagtttgggcggttcggagaacgaagacgcgattaaaaaagggaagagaagtaagggt
actagacggtacgtgccacaaaaaaattcagtagcttatgccttgttaattactctctac
agagggacaacaaatgggagtgaattcatgcgcaagcaggagctaattgatgctgctgaa
gctagtggactttctcgagggccaattgtgcctgaaaaggggaaagggaagcctggaaaa
tttgggagctcaccacgggaatggtatagtggatggagttgcatgaagacattaataacg
aaaggattggttgttaagtcaagctgccctgcaaagtacatgcttacagaagaaggcaag
gaagcagcaaaggaatgtctttctagatctgggttagttgattgcaatgacaactcagct
attgcgcacagatcttcgtgtattgagccaaaggagttagactcatcagatatgctgaga
ttttgtggtcctgaaccaaaggatatagactcaacggaaatagacatgccagagttggct
tctgctcaggctcgttcattaaacgaagttgcacttacttcttttgcttccaatagtgag
aagaaatcatttcacatcccttctgaatctcttgataggtttgttaaaatggggtattct
agggaacaaactactcgtgcttttcttaaggcatcagacgcatcgcagacccaggacatg
tcttcactctggccggctgttctatgtcgtctaaaagaagatcaagtctatggcctgcct
attcagcctaatattacaagagtggatgattttgctgttggtaattctgtttctaacata
catggtaatagttttatcaatggcacatgcaacgggccactcgagggtgtaaagttgccg
cttcttgctacttccggtcagatggcttgtcctttgaaagcttgctcattcactgataag
gaggggacagaagctttggaatctaaatctcatgtattagcaatgccgcctttggatgtc
ggagaacgttttgaagacacttacggtataatcttagtactggatgacagggaacatttt
gctagcaaagggtcccagtctaggaagattattgacaacataagttctcaattcaaaatt
caaatagaggttagaagactgcctgttggggatgccatttggatagctcaccataaacgt
attggaactgaatatgttcttgactttgttgttgagcggaaaaaagttgatgatttgcgc
ttgtcaatcagagataatcgatataaagatcagaaactgcgacttctgaggtgtggactc
aagaaggtgatatatcttgttgaaggtgacccaaattcgtgtgaagctgctgaaagtatt
aaaactgcttgtttcacgactgaaatattggaaggttttgatgtacaaagaactaatggc
ttgggagaaacgttaaggaaatatggtcatcttactcaggccatataccagtactacaag
tctttggattcagagcataaaagctctagggtttgcccacaatatcgtgaattcattagg
agatgtgaagatttagacaagctgactgtcagtgatgtgtttgcgatccaattaatgcag
gttccacaagtaactgaggaggttgctattgctgttctagagatgttcccaactttgcga
tctctttctctggcatactctgtgctagatggtgacatttgtgctcaagaggatatgctc
aagaagcagagtaacaatttgattagcagtgctgctagcagaaacatcttccaactgatt
tggggcggttga
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