Coffea arabica (coffee): 113732539
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Entry
113732539 CDS
T11342
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113732539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113732539
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113732539
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
DSE1_N
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
ASA1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_EIPR1
CFAP251_N
Beta-prop_RIG_2nd
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_NOL10_N
Beta-prop_DCAF4
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_SPT8
PAC11
WD40_RFWD3
Beta-prop_Vps41
Pep3_Vps18
Beta-prop_DCAF12
WD40_like
PROPPIN
WD_LRWD1
WDR54
Motif
Other DBs
NCBI-GeneID:
113732539
NCBI-ProteinID:
XP_027114167
UniProt:
A0A6P6WK95
LinkDB
All DBs
Position
2e
Genome browser
AA seq
782 aa
AA seq
DB search
MMYGGDPHHQPPQQHHQHPPGPPMPQGPPQQLPHQMHHQYPPHNRHQPQPPQGVDFPRAP
PPQQQQLPGPPPMMRQPSASSTTLNAPQPHPADYHHPIAQPPPSLHPHPPYDSHGDSFAA
KRMRKIGQRRTVDYTSTVVRFMQIRMWQRDSRDRTVLQPTPAAAVDMLPTAAYLDNPSTS
FAAKFVHTSLNKNRCSINRVLWTPSGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAVR
SMVWSYNDNWMVTGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT
TVKVWDFARCQEEYSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGRELCSFHG
HKNTVLCVKWNQNGNWVLTSSKDQIIKLYDIRAMKELDSFRGHRKDVTALAWHPFNEEYF
VSGSFDGSIFHWLVGHETPQVEISNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP
GDTAREKFNTAGFGEQNSAIGGRMPGNFPGHEAPMTPGPFASGLTRNEGTIPGIGVAMPL
SVPSLDSSAQADQKPPTSISTPLGAPPLPPGPHPSLLSSNQQQAYQQNAQLVQQHQQMAQ
QISLPVPPPNMPQLQPSAHQPLLPHPHLARPPPQLQPLNTPSSMPSSMPGSLPIPGPIGG
PMGMQGNMNQMVPPMPQGHFMGMNAMPSGSGLPGNIPPGGIPNGLLNMQGPSNASGSQMF
QPGGGFNRPQTGQMQMMPGLNPYQPGNPNPPAMGSLPSNFGLISGMPPPLPPGPPPHNQT
HK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacggcggagatcctcatcatcaaccgccgcagcagcaccaccagcacccaccg
ggtccgccgatgccacagggtccaccacagcagctgccgcatcaaatgcaccaccagtac
ccgccccacaaccgccaccagccacaaccaccacaaggcgtggactttcctagggctcca
ccaccgcagcagcagcagctcccgggtccacctcccatgatgcgccagccctccgcttct
tccaccactctcaatgctcctcagcctcatcctgctgactatcaccatcccatagctcag
cctcctcctagtcttcatcctcaccccccttacgattctcatggtgacagctttgctgct
aaaagaatgagaaagattgggcaaagaagaacagtagattataccagcactgttgtacga
tttatgcagattcgcatgtggcagcgtgattcaagagataggacagtcttacaacctaca
ccagctgcagcagttgatatgttgccaactgctgcttatttagataatccatccactagt
tttgcggcaaagtttgtacatacttctctaaacaaaaatcgttgttcaattaatcgcgtc
ctgtggacacctagtgggaggcgtctcatcacaggatctcaaagtggtgaatttaccctt
tggaatgggcagtcatttaactttgaaatgatattacaggcccatgatcaagcggtcagg
tctatggtgtggagttataatgataactggatggtcactggtgatgatggaggcgctatt
aagtattggcaaaacaacatgaacaatgtcaaggccaacaaatctgcgcataaagaatca
gtccgtgatttaagcttctgcaggacagatttgaaattctgctcctgctccgatgacact
actgttaaggtctgggactttgctcggtgtcaagaagagtactctctatctggccatggt
tgggatgtgaaaagtgttgactggcatcccaccaagtcattgttagtttctggtggaaaa
gacaaccttgtaaagctttgggatgcaaagtctgggagagagctttgttcatttcatgga
cataagaatacagtgctttgtgttaaatggaatcaaaatgggaactgggtccttacgtct
tcaaaggatcaaattattaagctttatgacataagggccatgaaggagcttgactctttt
cgtgggcaccggaaggatgtcacagcattggcttggcatccatttaatgaagaatatttt
gttagtgggagtttcgatggatcaatatttcattggcttgttgggcatgaaactcctcag
gttgaaatatcaaatgcacatgataatagcgtctgggaccttgcttggcatcctattgga
tatctcctctgcagtggtagtaatgatcacactacaaagttctggtgcagaaataggcct
ggagatactgctcgtgagaaatttaatacagcaggttttggtgagcagaacagtgctatt
ggtggtcgcatgcctggcaattttcctggacatgaggctccaatgactcctggaccattt
gcatctggattgacacggaatgagggaacaatcccgggaattggtgttgctatgcctctc
tctgttccatctcttgattcatctgctcaggcagatcagaagccacctacatcaatatcg
acacctttaggagctcctcctcttccacctggtcctcatccatctctcctttcatccaat
cagcagcaagcttatcaacaaaatgctcagctagtgcagcagcatcaacaaatggcacag
caaatatccctgcctgtgccacccccaaatatgccacagttacagccttcagcacatcaa
cctttgctaccacatcctcatttagctcgtcctcctccccagctacaaccccttaataca
ccttcaagcatgccatcttctatgccaggatctctacccattccagggcctattggtggt
ccaatggggatgcaaggaaatatgaatcagatggtgcctccaatgccacagggccacttt
atgggcatgaacgccatgccttctggatctggactaccaggcaatataccacctggtggt
attccaaatggattattgaacatgcaaggcccttcaaatgcaagtggcagccaaatgttt
caaccaggagggggttttaacaggccacagactgggcaaatgcaaatgatgccagggctt
aatccctaccagcctgggaacccgaatcctcctgccatgggaagcttgccatcaaatttt
ggtctaatatctgggatgccaccaccgctgccacctggtccgccaccacataatcaaaca
cataagtag
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integrated database retrieval system
