Coffea arabica (coffee): 113732540
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Entry
113732540 CDS
T11342
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X2
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03022
Basal transcription factors
carb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113732540
09124 Replication and repair
03420 Nucleotide excision repair
113732540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113732540
03400 DNA repair and recombination proteins [BR:
carb03400
]
113732540
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113732540
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113732540
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
113732540
NCBI-ProteinID:
XP_027114169
UniProt:
A0A6P6WFL1
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Position
2e:complement(48188001..48200371)
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AA seq
601 aa
AA seq
DB search
MADKQQQVVVKRARHKSSVKDPGTPGVLKMTKDRFTFMANDPSSPVKLNVEFRTIKGHKF
TKDGTKQALLNLTQDQGGNYIFEFENFPDRNVCKDFVASAIALSGEAGRTVPEKSAVPIQ
DEQLSAAEMERRIKLLQEDSDLQKLHKQFVIGGILSEAEFWATRKKLLEQNYSRRPKQRV
ALKNDMWSTKPLADGQSNRVTFNLTPEIILQIFAEKPAVRQAYLNFVPNKMTEKEFWTKY
SRAEYLHSTKNVIAAAAEAAEDEELAVFLKQDDMLVNEARKKIRQVDPTLDMEADEGDDY
MHLPDHGLPRNDNKDVLDSQYEPYRRSFSQHLNQHAAVVLQGRVIDVELGDTRSVAEALA
RTKHAELAKDASDVYLDKERLERISRMTEIEDLQAPRDPAVAPLSIKDPRDYFDSQQANA
FSTLGDTVSGAKQLKCSVSTREAYCSLKECISEIKFQGLTEPTINSEVAFKVLNGLAQNI
SSNKYHLGRNPNESILDSLPKITREELLLHWSSIQELLKHFWSSYPITTKYLLTKATKLK
DAMSQIYPKLQEIKESVQSDLRHQVSLLVQPMLQALDAAFAHYDADVQNRSARSGERPNG
F
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcagataagcagcagcaggtggtggttaagagagccaggcacaagtcatctgtgaag
gaccctggaacacctggcgttttgaaaatgactaaagataggtttactttcatggcaaat
gatccgagttcacctgtgaaacttaatgtagagttcagaacaattaaagggcacaaattc
accaaggatggaactaagcaagccctccttaaccttactcaggatcagggtggcaattac
atttttgagtttgagaacttcccagaccgcaatgtttgcaaggattttgtagcctcagct
attgcactatccggagaagctgggagaacagttcctgaaaaatctgctgttccgattcaa
gatgagcaacttagtgcggctgaaatggagcgtcgtattaagctactgcaggaggatagt
gatttacagaaacttcacaagcaatttgtgattggaggtatcctatctgaagctgaattc
tgggcaacgaggaagaagttgttggagcagaattacagcaggaggccaaagcaaagagtg
gcattaaaaaatgatatgtggagtaccaaacctttagctgatggtcagtccaacagagtt
acatttaacttaacaccagagattatccttcagatttttgcagagaaaccagctgttcgc
caagcatatctcaattttgtgccaaacaagatgactgaaaaagagttttggactaaatac
tcgcgagcggaatacctccatagtacaaaaaatgtcattgctgcagcagcagaggctgca
gaagatgaggaacttgccgtatttttgaagcaagatgacatgttagttaatgaagctcgg
aagaagattaggcaggtggatcctactttggacatggaagctgatgaaggagatgattac
atgcatctcccggaccatgggctacctcgcaatgacaacaaggatgttttagactcgcaa
tatgaaccataccgaagatctttctcacaacacctcaaccagcatgcagcagtcgttctt
caagggagagttatagatgttgagctaggagatacaagatctgtagctgaagcacttgca
aggacgaaacatgctgagttagctaaagatgcatctgatgtgtacttggacaaagagcgg
ttagagaggatttctcgaatgactgagattgaggatcttcaggcacctcgtgaccctgca
gttgcaccacttagtattaaggatcctcgtgactacttcgattctcagcaagcaaatgct
ttcagcactcttggtgatactgtttctggtgcaaaacaattaaaatgtagtgtgagtact
cgtgaagcatattgttctttgaaggagtgcatctccgagattaaatttcagggtttgact
gagcccacaattaattcagaagttgcttttaaggttttgaatggattggctcagaatatt
tcaagtaacaagtatcatcttgggaggaatccaaacgagagtattttggatagtttgcca
aaaatcaccagagaggaactattacttcactggtcatccatccaggagttattgaagcac
ttttggtcatcatatcctattacaaccaagtatcttttaactaaggcaaccaaattgaag
gatgctatgtcccagatatatcctaagctacaggagatcaaggaatctgtgcagtcagac
ttgcgacatcaagtttcgcttcttgtgcaaccaatgcttcaggctctagacgcagctttt
gcacattatgatgcagatgtacagaacagatcggcaaggagtggggagagaccaaatggt
ttctaa
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