Coffea arabica (coffee): 113732881
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Entry
113732881 CDS
T11342
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113732881
09123 Folding, sorting and degradation
03018 RNA degradation
113732881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113732881
03041 Spliceosome [BR:
carb03041
]
113732881
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113732881
mRNA degradation factors
5'-3' decay
Lsm complex
113732881
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
113732881
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
113732881
NCBI-ProteinID:
XP_027114701
UniProt:
A0A6P6WJI5
LinkDB
All DBs
Position
2e
Genome browser
AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKTRSDRKPPGVGRGRGRGRDDSAAGRQGKPIGRGMDD
GAAKGAGRGKGGPSGRSGGGKGGGRGRGL
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgctgccactttctctgcttaagactgctcaagggcatcccatgttggtggagctaaaa
aatggggaaacatataatggacaccttgtcaattgtgacacttggatgaatatccatctt
cgtgaagtcatctgcacatcaaaggatggagacagattttggagaatgccagaatgttat
attcgtggtaatacaatcaagtatctacgagttccagatgaggtgattgataaggttcaa
gaagaaacaaaaacccgttcagatagaaagccaccaggcgttgggcgtggaagaggaaga
ggtagagatgacagtgctgctgggagacagggaaaaccaattgggcgtggcatggatgat
ggagctgccaaaggtgcaggcaggggcaagggaggaccatctggcaggtctggtggtggt
aaaggtggtgggcgtggacgtggcttgtaa
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