KEGG   Coffea arabica (coffee): 113732881
Entry
113732881         CDS       T11342                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
carb  Coffea arabica (coffee)
Pathway
carb03018  RNA degradation
carb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113732881
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113732881
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:carb03019]
    113732881
   03041 Spliceosome [BR:carb03041]
    113732881
Messenger RNA biogenesis [BR:carb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     113732881
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     113732881
Spliceosome [BR:carb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    113732881
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 113732881
NCBI-ProteinID: XP_027114701
UniProt: A0A6P6WJI5
LinkDB
Position
2e
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKTRSDRKPPGVGRGRGRGRDDSAAGRQGKPIGRGMDD
GAAKGAGRGKGGPSGRSGGGKGGGRGRGL
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctgccactttctctgcttaagactgctcaagggcatcccatgttggtggagctaaaa
aatggggaaacatataatggacaccttgtcaattgtgacacttggatgaatatccatctt
cgtgaagtcatctgcacatcaaaggatggagacagattttggagaatgccagaatgttat
attcgtggtaatacaatcaagtatctacgagttccagatgaggtgattgataaggttcaa
gaagaaacaaaaacccgttcagatagaaagccaccaggcgttgggcgtggaagaggaaga
ggtagagatgacagtgctgctgggagacagggaaaaccaattgggcgtggcatggatgat
ggagctgccaaaggtgcaggcaggggcaagggaggaccatctggcaggtctggtggtggt
aaaggtggtgggcgtggacgtggcttgtaa

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