Coffea arabica (coffee): 113732887
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Entry
113732887 CDS
T11342
Name
(RefSeq) serine/arginine-rich splicing factor SR30
KO
K12890
serine/arginine-rich splicing factor 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113732887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113732887
Spliceosome [BR:
carb03041
]
Common components
Common spliceosomal components
SR proteins
113732887
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
113732887
NCBI-ProteinID:
XP_027114709
UniProt:
A0A6P6WH00
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Position
2e
Genome browser
AA seq
295 aa
AA seq
DB search
MGRSSRSSRTIYVGNLPGDIRESEVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFDDYRDA
DDAIRGRDGYNFDGHRLRVELAHGGRGSSSSYDRYSSYSSGGSRGGVSRRSDYRVLVTGL
PPSASWQDLKDHMRRAGDVCFSQVFRDRDGMRGIIDYTNYDDMKYAIRKLDDSLFRNQYS
RAYIRVEEYDLRRSFSKSPSRSPGYSRSRSPGYSYSSRSRSASPRARYSRRSPSRSLSRS
VSSGALSDSPRYVSRSPRKFRSPILSRRKYASRSPSLSRSRSRSISGSLSPVRSD
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgctcaagccgctcaagccgaaccatttatgtgggaaatctccccggagatatc
cgtgagagtgaagtggaagacttgttttacaagtatggtcgtattgtggatattgacttg
aaaattcctcctcgaccacctggttatgcatttgtggagtttgatgattaccgtgatgct
gatgatgctattcgcggtcgagatggttataactttgatggtcaccgattaagggttgaa
ctcgcacatggtgggcgaggatcatcatcatcatatgatcgctacagcagttacagtagt
ggagggagtcgtggtggtgtttcaaggcgctctgactatcgtgttttggtcacagggctg
ccaccttctgcttcatggcaggacttgaaggatcacatgcgtcgagcaggtgatgtctgt
ttctctcaagttttccgtgatcgtgatggtatgagagggattattgattacaccaactat
gatgatatgaagtacgcgatacggaaacttgatgattctctgtttcgcaatcagtattcc
cgggcttacatacgggtggaggagtacgatctacgaagaagcttctccaaaagtcctagt
aggagtcctggctattcaaggagtaggagtcctggctatagctacagcagcaggagcagg
agtgcttctccaagggccagatactctcgtcgctctccatctagatctctctcaaggtct
gtttcatcaggggctctgtctgactcccctcgttatgtttcaagatctccaaggaaattt
agaagcccaatactatctcgccgcaaatatgcaagcagaagtccaagccttagtaggagc
cgaagcaggagcatctctggatctctatctcctgtgagatctgattga
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