Coffea arabica (coffee): 113733278
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Entry
113733278 CDS
T11342
Name
(RefSeq) protein SUPPRESSOR OF PHYA-105 1 isoform X1
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
carb Coffea arabica (coffee)
Pathway
carb04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
113733278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
carb04121
]
113733278
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
113733278
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_EIPR1
DSE1_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR3_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
ANAPC4_WD40
Beta-prop_WDR19_1st
WD40_Gbeta
Beta-prop_NOL10_N
ASA1
Beta-prop_WDR35_TULP_N
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_WDR41
Beta-prop_EML
WD40_like
NBCH_WD40
Beta-prop_ACSF4
Ams2-SPT21_N
Beta-prop_DCAF12
PAC11
Beta-prop_Aladin
Eap1
BDI_1685-like_C
Motif
Other DBs
NCBI-GeneID:
113733278
NCBI-ProteinID:
XP_027115372
UniProt:
A0A6P6WIT4
LinkDB
All DBs
Position
2e
Genome browser
AA seq
1028 aa
AA seq
DB search
MEHVEDKSTVEHKSKEPELDKEQEGCSTRSESSGLRVSTVSDLLGSSTNSDGDQLQKGLS
NRYVMALGNQHVPRTKAYSVTDVGKGNAVEESTKRDFKTSILASVSSTNDCEAINHRQKD
MWQNFFRLAGGIRSRNFSGASVSEKQGGISLSSKEKKEMESVGIKELKPLMTKQKNKVLG
GVSTRSADNCRSHTQSNQQPGGDDRSKVLQSSSFTNFFRKQSREDKAVECTEPEVHYRPH
SAAMTQYEKQLITLSAHNSGVLADTKASQSLPPLPDKYLVGPVASHGKITLRDWLSSGAS
EMKKVERLRLFKLIVELVDLAHCEGIGLLDLRPSKFIFASPDSIKYTGSSVPIGLMTMVN
QAMTKKKPLEQDAYDQREMLVKKQKLGKDMESMRHESQIFSAYCTVNETIGPKSELEPEV
VQMEKKWYACPEELHSSGLLSSNIYNLGILLFELLCQFASPELHFAAMLDLRDRILPANF
LSENPKEAGFCFWLLHPEPSCRPTTREILQSESIYSSEDVLVGDNAPSMMEKEEDVESEL
LLHFLDSLKEQRQNHVSSLLESIKCLETDIRKIGSRHEQEFYSDWMDQRLSASRSSLVSK
DRDDIEILPRIFSSRSMIEEKLNLMKNISQLENAYFSLKSQAQITENSSLERADKALLSI
REKWFEAQDANKDPNMEEKLIDRVGVFFEGICRFARYSTFQVCGTKWNADFLNSANVICS
LSFDRDEEYIAAAGVSKKIKIFEFGSLLDDPVDIQYPMVEMSNRSKLSCVCWNQYIQHFL
ASTDYDGIVQIWDASNGQCFAQYIEHQKRAWSVDFSCVDPAKFASGSDDCSVKLWSINDR
NSIGTIWNPANVCCVQFSTCSSYILAFGSADYKIYCYDLRHTRIPWCALAGHGKAVSYVK
FMDSETLVSASTDNTLKLWDLKNTTIEGSISNACSLTFSGHTNEKNFVGLSVLDGYIACG
SETNEVFAYYRSLPMPIASHKFGSFDPISGHELDESNGQFVSSVCFRRKSNIVVAANSSG
SIKLLQMV
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggagcatgttgaggataaatctaccgttgaacataagagtaaagagccagaacttgat
aaagagcaagagggctgcagcactagatcagaatcgtcaggattgcgtgtatctaccgtt
tctgacttgctaggaagctccaccaactccgacggagatcaattgcaaaagggtttgtca
aacagatatgtgatggctctgggaaatcaacatgtcccccgtacaaaggcttattctgta
actgatgtggggaaagggaacgcagttgaagaatctacgaagagagattttaagacttcc
atcttggcttcggttagcagcacaaatgattgtgaggcaatcaatcataggcagaaggat
atgtggcaaaatttttttcgattggcaggggggataaggagtaggaatttttctggagca
tcagtttccgagaagcagggtggaatatcattaagttcgaaggagaagaaggaaatggag
tctgtgggtattaaggagcttaaacctttgatgacaaaacagaagaataaagtcctaggt
ggagtttccactcgttctgcagataattgtcgctcgcacactcaaagcaatcaacagcct
ggtggggatgatcgttcaaaagtattacaatcttctagctttactaatttcttcaggaaa
caatctcgcgaggataaggctgttgaatgtacagaacctgaagttcattacagacctcat
tctgcagccatgacgcaatatgaaaaacaattgattactcttagcgcccataattctggc
gtgttggcggacacaaaggcttctcaaagtctgcctccgttgcctgataagtatctggta
ggacctgtagcatctcatggtaagatcactttgagagattggctaagttctggggcttct
gagatgaagaaagttgagaggctgcgcttatttaaactgattgtggagttagtggattta
gcacactgtgaaggaattggactactagacttgaggccatccaaattcatttttgcctca
cctgatagcattaagtacactggttcatcagttccaataggattgatgaccatggtgaac
caagctatgactaagaaaaagccattggagcaggatgcctatgaccagagagaaatgctt
gtaaagaagcaaaagcttggcaaggacatggaatcaatgagacatgaatctcaaattttt
tctgcctattgcacagttaacgaaactattgggcccaagtctgaattggaacctgaggtg
gttcaaatggaaaagaagtggtatgcttgtccagaggagcttcatagcagtggcctattg
tcatcaaatatttacaatctaggcattctcctatttgagttactttgccaattcgcatca
ccggagttgcatttcgcagccatgttggatttgcgagaccgaattctacctgcaaatttt
ctttctgaaaatccaaaggaagctggtttttgcttttggctgcttcatcctgaaccttcg
tgccgtccgacaacaagggaaatcctacaatctgaatcaatttatagttccgaggatgtc
cttgtgggagataatgcaccatcaatgatggagaaagaagaggatgtagaatcagagctc
ttacttcattttctagattcgcttaaggaacaaaggcagaatcatgtttcaagtttactg
gagagtataaaatgcttagaaacagatatcagaaaaattggaagcagacatgaacaagaa
ttttactcagattggatggaccaacgtttaagtgcttcaaggtcaagtcttgtttctaaa
gatagggatgatattgaaattcttccaagaatattctcatcaagaagtatgattgaagaa
aagttaaatttgatgaaaaacatcagccagctggaaaatgcttatttctctctgaaatct
caggcccaaatcacagagaattcttccttggaaagagcagacaaggccttattgagtatt
cgtgagaagtggtttgaggctcaagatgcaaataaagacccaaacatggaagaaaaactg
attgatcgagttggagtcttctttgaaggcatttgtagatttgctcgctatagtaccttt
caagtgtgtggaacaaagtggaacgctgattttctaaactctgcaaatgtcatttgctct
ttgagttttgatcgggatgaggagtatattgctgctgcaggggtctcaaagaaaatcaaa
atctttgagtttggttcacttctggatgaccctgttgacattcagtatcctatggttgag
atgtcaaacagatctaagcttagttgtgtttgctggaaccaatatatccagcactttttg
gcttctacagattatgatggtatagtgcagatctgggatgcaagcaatggtcaatgcttt
gctcaatacattgagcaccagaagagggcttggtctgttgacttttcttgtgtggatcca
gcaaagtttgccagtggaagtgatgattgttctgtgaaattgtggagcatcaatgacaga
aactctattggaacaatatggaatcctgccaatgtttgctgtgttcaattctctacttgc
tcgtcatatattttggcttttggttctgctgattacaagatctactgttatgatcttcga
cacacaagaattccttggtgtgcattagctggccatggaaaggcagttagctatgtgaag
ttcatggattcagaaactcttgtttctgcatccacggataacaccttgaagctttgggac
ctcaagaacactaccattgagggttctatttcgaatgcttgcagcttgacctttagtgga
catactaatgagaagaattttgttggtttatctgttttagatggatatatagcatgtggt
tctgaaactaatgaggtttttgcgtattacagatctctgccaatgccgattgcttctcat
aagtttgggtcctttgatcctatatctggtcatgaacttgatgagagcaatgggcagttt
gtttcaagtgtttgctttagaagaaaatctaacatagttgttgctgcaaactcaagtggt
agtataaagctattgcaaatggtctga
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integrated database retrieval system
