Coffea arabica (coffee): 113733715
Help
Entry
113733715 CDS
T11342
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Module
carb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113733715
Enzymes [BR:
carb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
113733715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
EutK_C
Motif
Other DBs
NCBI-GeneID:
113733715
NCBI-ProteinID:
XP_027115706
UniProt:
A0A6P6WM75
LinkDB
All DBs
Position
3c:43838833..43840857
Genome browser
AA seq
391 aa
AA seq
DB search
MNSKMRFLAVPFLFIFFLLPLAESVTYNVQSYGAKSDGRSDSTNSFLSAWAAACASVAPA
TIYVPPGRFLVGGASFWGQNCKNNAITIRIDGTLVAPSDYNVLGHTGNWLKFERVNGLSI
YGGTLDGQGTGLWACKNSGKHCPQGATSLGFYNSNKVLVSGLSSLNSQFFHIILDGCQNT
RLEGVKISAPENSPNTDGIHVQSSSGITITNSHIGTGDDCISLGPGCSNMWVENINCGPG
HGISIGSLGSSAQEPGVKNVTVKTVTFSGTENGLRIKTWAKPSTGFVAGVLFQHAVMINV
QNPIIIDQNYCPSGKCRGQASGVRISDVTYQDVHGTSATEVAVNFDCSKKYPCSRITLED
VKLSYKDQPAMASCINAGGSSSGLVEPKACL
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcaaaatgagatttcttgctgtcccatttctcttcattttcttcctcttgcca
ttagctgagagtgtaacgtacaatgtgcagagttacggggcgaaatctgatgggagaagt
gattccacgaattcttttctgagtgcatgggctgcagcttgtgcctcagttgcgcctgca
acaatctatgttccaccgggaagatttttggttggtggagcctcattttggggccagaat
tgcaagaacaatgctataaccattcgcatcgatggaacccttgttgctccatctgattat
aatgttcttggacatactggtaactggctcaagtttgaaagagttaatggactttcgatt
tacggtggaacccttgatggccaagggactggtctctgggcttgcaaaaactccggcaag
cattgtcctcagggagcaacgtcattgggattctacaattcaaacaaagtcttggtcagt
ggactaagttcattaaacagtcaatttttccatatcatcctcgatggctgccaaaacact
aggctagaaggagtaaagatttcagctccagaaaacagcccaaacactgatggaattcat
gtccaatcatcttctggcattacaattactaactctcacattggcactggtgatgattgc
atatcattaggccccggatgctccaacatgtgggttgagaatatcaactgtggtcctggc
catggaataagtattggtagcctgggaagcagtgcgcaagaaccaggagttaaaaatgtg
acagttaaaactgtaacattttcgggcacagaaaatggtctgaggataaaaacatgggca
aagcctagcacaggatttgttgccggagttctgtttcagcatgcagtaatgattaatgtc
caaaacccaatcataatcgaccaaaattactgccccagcggcaagtgtcgcggtcaggcc
tcaggcgtgaggattagtgatgtgacataccaagatgtacatggaacatcagcaactgaa
gttgctgtaaattttgactgcagtaaaaagtatccatgcagccgcataactctggaagat
gtcaaactttcctacaaggatcaaccagctatggcttcatgtatcaatgcaggcggatct
tcatctggtttagttgagcccaaagcctgtttgtag
DBGET
integrated database retrieval system
