Coffea arabica (coffee): 113733758
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Entry
113733758 CDS
T11342
Name
(RefSeq) polygalacturonase-like isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Module
carb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113733758
Enzymes [BR:
carb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
113733758
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
ZirS_C
NosD
Beta_helix
Motif
Other DBs
NCBI-GeneID:
113733758
NCBI-ProteinID:
XP_027115739
UniProt:
A0A6P6WJW9
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Position
3c:43986328..43988632
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AA seq
391 aa
AA seq
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MEKPISLFTVTLLFLLFNQSLAIPGTYNILELGAKPDGKTDSSKSLLSAWAAACGSTKPA
AIFVPKGRYFVKQAQFLGPCKNRAICFRIDGTLVAPSDYKAIGNADFWLQFQRVDGVSIR
GGILDGQGTGLWGCKASGKNCPTGTTTLGFTNSNNIAIAGLTSLNSQLFHLVFNGCNTVK
LQGVKVSAAGNSPNTDGIHVQYSSGVTILNSKISTGDDCVSIGPGTTSLWIENVLCGPGH
GISIGSLGKDFEEEGVQNVTVKSVTFRNTQNGAMIKSWGRPSKGFVKDVLFQHATMINVQ
NPILIDQNYCPDNINCPAQVSGIKINDVTYQDIHGTSATEIAVKFDCSKKNPCSGIRLED
VKLTYKNQPAKTSCANAAGTTLGLLGINSCL
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcccattagtctttttactgtaacacttctcttcttgttgttcaatcaatca
ttggccattcctggcacgtacaacattttagagttgggagcaaaacctgatgggaaaact
gattcatccaagtctttattaagtgcatgggctgcagcttgtggctctaccaagccagcc
gcaatttttgtaccaaaaggaaggtattttgtgaagcaagcacaatttctaggaccatgc
aagaatagagctatatgctttagaatagatggtacccttgtggctccttcagattacaaa
gccattggaaatgctgatttttggcttcaatttcaaagggttgatggagtttccattcgc
ggtggcattcttgatggccaaggtactggtctctggggttgcaaagcctccggcaagaat
tgtccgaccggcacaacgacattgggatttaccaactcaaacaacattgcaattgccggc
ctaacttctctcaatagccaattgttccacttggtgttcaacggctgcaacaccgtgaaa
ttgcaaggagtaaaggtttcggcggccggaaacagccccaacacggacgggattcatgtg
caatattcatcaggagtcacaatcttgaattccaagatcagtactggagatgactgcgtt
tcaattggtcctggcactacaagtttgtggattgaaaatgttctttgtggccctggccat
ggcatcagcattgggagtcttggaaaagattttgaagaagagggagtacagaatgtgaca
gtgaaaagtgttaccttcaggaatacacagaatggtgcaatgattaaatcatggggtaga
ccaagcaaaggttttgtcaaggatgttttgttccagcatgccactatgatcaacgtccaa
aaccccatccttattgaccaaaattattgcccggataacatcaactgtcctgcacaggtt
tcaggcataaaaataaacgatgttacgtatcaagacatccatggaacatcagcaacagaa
attgcagtcaaatttgattgtagcaagaagaatccgtgcagtgggataagattggaagat
gtgaaattgacatacaagaatcaaccagctaaaacatcttgtgccaatgctgctggaact
acacttggtttgcttggcattaatagctgtctgtaa
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