Coffea arabica (coffee): 113733794
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Entry
113733794 CDS
T11342
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Module
carb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113733794
Enzymes [BR:
carb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
113733794
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
113733794
NCBI-ProteinID:
XP_027115770
UniProt:
A0A6P6WKN5
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Position
3c:44012531..44014199
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AA seq
390 aa
AA seq
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MASSLRASCIFLLSLTALLTITSAATLNVISFGAKSDGRTDSTQSFLKAWASACSSVQAA
TIFVPRGRYLIKAAVFRGPCKNRITVRIDGTLVAPDDYWGLGNSGYWLLFVQVNRLSVIG
GTLDAKGAGFWACRASGRNCPVGARSITFNWVNDGLISGLTSINSQLMHVVVNSCKNVKV
QNVRIVAPDLSPNTDGIHVRGSTGVTISGSSIQTGDDCISIGPGTRNLWMEKIKCGPGHG
VSIGSLGRDFNEDGVQNVTLINSVFSGSDNGLRIKSWARPTTAFVSNIKFQNIIMKNVEN
PIIIDQNYCPVNRGCPRQTSGVKIDQVIYQNIQGTSATPVAVIFDCSPSNPCRGIKLRDI
KLTYLNRKAQSLCKNIGGTAAGVIMPESCL
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggctagcagcctgagagcttcatgcattttcttactatcattgacagcccttttgacc
atcacaagtgctgcaaccttaaatgtgatcagctttggtgcaaaatcagatggcaggact
gactcaactcagtcattcctcaaggcctgggcttcagcttgtagctctgtccaggcagcc
accatcttcgtccctcgagggcgttacttgataaaggcagcagtgtttagagggccatgt
aaaaacaggattactgtgcgaattgatggtactcttgtagcccctgatgattactggggt
ctaggaaactcaggctactggctattgttcgttcaggtcaaccgcctctcggttattggc
ggaactctggatgccaagggagctggattttgggcatgccgcgcgtcagggagaaactgc
cctgtcggagccaggtctataacattcaattgggtgaatgatggactgatcagcggcttg
acatcgattaacagccagcttatgcacgtagtggttaacagctgcaagaatgtgaaagtt
caaaatgtaaggattgtagctccagacctgagcccaaatacagatggcattcatgtccga
ggctcaacaggtgtcaccatcagtggcagtagcattcaaacgggagatgactgtatatca
attggtcctggaacaagaaacctgtggatggagaagataaaatgtggccccggacatggt
gtcagcatagggagcctgggcagagatttcaatgaagatggcgtccaaaatgtgacacta
ataaattcagtgttcagtggatccgacaacggcttgagaataaaatcatgggcaagacct
accactgcatttgtcagcaacatcaaatttcagaatatcatcatgaagaatgtggagaat
cctattatcattgatcagaactactgccccgtcaaccgaggttgtcctcgccagacttct
ggtgtaaagatagatcaagttatataccaaaatatacagggaacatcagcaacaccggtc
gctgtcattttcgattgtagtcctagtaatccttgcagaggcatcaagttgcgagacata
aagctcacctatttgaataggaaagcacaatcactttgcaagaacataggaggaactgca
gcgggagtcatcatgccagagagttgtttataa
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