Coffea arabica (coffee): 113734354
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Entry
113734354 CDS
T11342
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
carb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113734354
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113734354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113734354
04121 Ubiquitin system [BR:
carb04121
]
113734354
03400 DNA repair and recombination proteins [BR:
carb03400
]
113734354
Enzymes [BR:
carb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113734354
Spliceosome [BR:
carb03041
]
Complex B
Other components
Prp19 complex
113734354
Complex C
Prp19-CDC5 complex
113734354
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
U-box type E3
113734354
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
113734354
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
WD40
Beta-prop_EML_2
Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_NOL10_N
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_VPS8
DSE1_N
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_TEP1_C
CFAP251_N
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_WDR41
PAC11
U-box
zf-Nse
PROPPIN
WDR54
Beta-prop_RSE1_2nd
Beta-prop_ACSF4
WD40_like
V_ATPase_I_N
KNTC1_N
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
113734354
NCBI-ProteinID:
XP_027116671
UniProt:
A0A6P6WPQ2
LinkDB
All DBs
Position
3c
Genome browser
AA seq
531 aa
AA seq
DB search
MNCSISGEVPEEPVVSKKSGLLYEKRLIERHISDYGKCPVTGEPLTMDDIVPIKTGKIVK
PRPVQAASIPGMLGMFQIEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARAILAQAERQMPAAAAPVPAAAANAAALSNGKRAAEDDEIGPDGKRIRPGISANI
ISELTNCNAALSQQRKKRQIPPTLAPIDAVERYTQLNSYPLHKTNKPGILSLDVQYSKDI
IATGGVDTNVVVFGRSSGEILSTLSGHSRKVTSVKFVADGELLLSGSADKTVRLWQGSED
GNYECRHIMKDHDAEVQAVTVHATNNYFVTASLDNTWCFYDLASGLCLTQVSNGSTNDGF
TSAAFHPDGLILGTGTSDAWVKIWDVKSQTNVANFDDHRHGPVTGPVTAMSFSENGYFLA
TAAHDGVRIFDLRKLKNFRTFSPYDENTSTQCVEFDHTGSYLALGGADIRVFQVANVKAE
WNLVKTFPDLSGTGKATCVKFGPDAKYLAVGSMDRNLRIFGLPEEDGPSES
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctcaatttccggcgaggtgccggaggagccagtggtctcgaagaagtccgga
ctcctttacgagaagcgtttaatcgagcgacacatctctgattatgggaagtgtccggtt
actggggaacctctaacaatggatgacattgttccaattaagaccggaaagatagtgaag
cctcgacctgtacaagcagctagtatacctggaatgctgggaatgtttcagattgaatgg
gatagtttgatgctgtcaaattttgctttggagcaacaattacatacagcgaggcaagag
ctgagtcatgctttgtaccagcatgatgcagcctgtcgtgttattgcaaggttgaaaaag
gaaagggatgaagcaagggcaatactggctcaggctgaaagacaaatgcctgctgcagca
gcaccagtaccagcagcagcagctaatgctgctgctttaagcaatggcaaaagagctgct
gaggatgatgagattggtcctgatgggaagaggattcgaccaggaatctcagccaatatc
atttcagagctcacaaactgtaatgctgcactttcacagcaaaggaaaaagagacagata
cctccaacgttggctcccattgatgctgtggagagatacacacagctcaatagttatcca
cttcacaaaaccaacaaacctggtatattatctttggacgtgcagtattcaaaggatata
attgcaaccggtggagtggatacaaatgtcgtcgtttttggtcgatcttcaggagagatt
ttatctacactgagtggtcattcgaggaaggtaacaagtgttaaatttgttgcggatggg
gaactgttgctttctggatcagctgataagactgttcgattgtggcaaggatcagaagat
ggcaactatgaatgtaggcacatcatgaaggaccatgatgcagaggtgcaagcagtaacc
gttcatgcaaccaataactacttcgttacagcttcccttgacaacacgtggtgcttttat
gatcttgcttctggtctatgcctcactcaggtttccaatggttcaacaaatgatggtttc
acgtctgcagcttttcatcctgatggtcttatccttggaactggcacttccgatgcttgg
gttaagatttgggatgttaaaagccagacaaatgttgccaattttgatgatcatcgtcat
ggaccagttactggaccagttacagcaatgtcattttctgagaatggttacttcctagcg
actgctgcccatgatggtgtcagaatttttgatctgcgtaaactgaaaaatttcagaact
ttttccccttatgatgaaaatacatcgacacaatgtgtggaatttgaccatactggaagc
tacctcgcacttggtggtgcagatataagagtgttccaagttgccaatgtgaaagcggaa
tggaatttggtcaaaacattcccagacttgtcaggcactggtaaagcaacatgtgtgaaa
tttggcccagatgctaaatacttggctgttggatcaatggatcgaaatttaagaattttt
ggcctgccagaggaggatggtccttcagagtcttga
DBGET
integrated database retrieval system
