Coffea arabica (coffee): 113734394
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Entry
113734394 CDS
T11342
Name
(RefSeq) chaperonin CPN60-2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113734394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113734394
03110 Chaperones and folding catalysts [BR:
carb03110
]
113734394
03029 Mitochondrial biogenesis [BR:
carb03029
]
113734394
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
carb04147
]
113734394
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
113734394
Messenger RNA biogenesis [BR:
carb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
113734394
Chaperones and folding catalysts [BR:
carb03110
]
Heat shock proteins
HSP60 / Chaperonin
113734394
Mitochondrial biogenesis [BR:
carb03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
113734394
Exosome [BR:
carb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
113734394
Exosomal proteins of other body fluids (saliva and urine)
113734394
Exosomal proteins of breast cancer cells
113734394
Exosomal proteins of colorectal cancer cells
113734394
Exosomal proteins of bladder cancer cells
113734394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Flavoprotein
flgE_D3
Motif
Other DBs
NCBI-GeneID:
113734394
NCBI-ProteinID:
XP_027116722
UniProt:
A0A6P6WT68
LinkDB
All DBs
Position
3c:6161200..6166483
Genome browser
AA seq
575 aa
AA seq
DB search
MYRFAANLASKARVARNSSQQISSRLGWSRNYAAKDIRFGVDARALMLKGVEDLAEAVKV
TMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDAAGDGT
TCATVLTRAIFAEGCKSVAAGMNAMDLRRGINMAVDDVVTTLKSRARMISTSEEIAQVGT
ISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFNELEVVEGMKLERGYISPYFITNTK
TQKCELDDPLILIHEKKISSINAVVKVLELALKRQRPLLIVSEDVDSEALATLILNKLRA
GIKVCAIKAPGFGENRKASLQDLAALTGGQVITEELGLNIDNVELDMLGSCKKVTVSKDD
TVILDGAGDKKAIEERCEQIRSGIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEV
GEKKDRVTDALNATKAAVEEGILPGGGVALLYASKELEKLQTANFDQKIGVQIIQNALKT
PVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVLRTALVDAA
SVSSLLTTTEAVVVELPKDEKAAPAMGGGMGDMDY
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgtatcggtttgcagcaaatcttgcctccaaagccagggttgccagaaacagcagccaa
cagatttctagtcgattgggatggagcagaaattatgcggcaaaagatattagatttgga
gtagacgccagggctttgatgctaaagggcgtcgaggatcttgctgaggctgtcaaagtt
actatgggtccaaagggccgtaatgtggttattgaacaaagttggggtgctcccaaagta
acaaaagatggtgtaacggtagcaaaaagtattgaattcaaggacaaagtcaagaacata
ggtgcaagcctagttaagcaagttgcaaatgcaactaatgatgcagctggtgatggaact
acttgtgctacagttctcacccgtgcaatatttgcggagggttgcaagtctgttgcagct
ggtatgaatgcaatggaccttaggcgtggaatcaatatggctgtagatgatgtagtaaca
acgttaaagagcagggcaaggatgataagcacatcagaagaaatagcacaggtagggaca
atctctgcaaatggagaaagagaaattggcgagttgattgctaaggcaatggagaaagta
ggcaaggagggagttatcactattcaagatggaaaaacactctttaatgagcttgaagtt
gttgaaggaatgaagttagagaggggctacatatcaccatatttcattacaaatacgaag
acccagaaatgtgagttggatgaccccctgattctgatccatgagaagaaaatatcaagc
attaatgctgttgtaaaggtgttagaattggctctaaagagacaaagaccccttctgatt
gtttctgaagatgtggatagtgaagcccttgctactctgattctcaacaagcttcgtgct
ggaatcaaggtttgtgcaataaaagctcctgggtttggtgaaaatagaaaggccagtctg
caggatcttgcggctctaactggtggccaagtgataactgaagagcttggattgaacatt
gacaatgttgaattggacatgttaggctcatgtaaaaaggtcactgtatccaaagatgac
actgtgatccttgatggtgctggagacaagaaggcaatagaggaaagatgcgaacagatt
cgatctggtatcgagttgagtacatctgactatgacaaggagaagctgcaagagaggctg
gctaagctttctggtggtgtggcagttttgaagattggaggggctagtgaagctgaagtt
ggtgaaaagaaagacagagttacagatgctctaaatgccaccaaggctgctgtggaagaa
ggaattctaccaggtggtggcgtagctcttctctatgcttctaaagagttggaaaaactg
caaacagccaactttgatcagaagattggtgttcagattattcagaatgcattgaagacc
ccagtacatacaattgcctccaatgcgggagtagagggtgctgttgttgtcggcaagttg
ttggagcaagataaccctgatctcggatatgatgctgctaaaggtgaatatgtagatatg
gtaaaagcaggaattattgatccattgaaagtattaagaacagctttggttgatgccgca
agtgtttcttctctactcactacaactgaggccgtggtagtcgagctccccaaggatgag
aaggcagctcctgccatgggtggtggcatgggtgatatggactactga
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