Coffea arabica (coffee): 113735189
Help
Entry
113735189 CDS
T11342
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Module
carb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113735189
Enzymes [BR:
carb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
113735189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
ZirS_C
CfAFP
Fn3_VIN3
Motif
Other DBs
NCBI-GeneID:
113735189
NCBI-ProteinID:
XP_027117967
UniProt:
A0A6P6WWW4
LinkDB
All DBs
Position
3e:complement(48126509..48128223)
Genome browser
AA seq
392 aa
AA seq
DB search
MAYPGKLFSLALPFLFFFLSSASTITYNVQKFGAKPDGKTDSTKAFLSAWAAACASVKSA
TIYVPRGRYLLGAASFWGNTCKNNAIKISIDGTLVAPSNYRTIGYAGNWLKFERVNGVTI
SGGTLDGQGISLWNCKASKSNCPGGATTLAFYNSNNIVISKLTSLNSQMFHVMLYGCQNA
KLQGMKISASATSPNTDGIHISGSSGVTILGSNIATGDDCISIGPGASNLWIENVSCGPG
HGISIGSLGWDMQEPGVQNVTVKTVTFRDTQNGLRIKTWARPSNGFVKRVLFQNAVMLNV
RYPIIIDQSYCPTKNNCPNQGSGVKISDVTYQQIHGTSSSQVAIAIGCSNDSPCSGIRLQ
DVNLRYMNQPAQASCSNVAGTSSGFVQPKGCL
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggcttatccaggaaaactcttttcactcgcattgccctttttgttcttcttcttatca
tcagcctccacgatcacatataatgtgcaaaagtttggagcgaaacctgatggaaagacc
gattcaacaaaggcctttctcagtgcatgggcagcagcttgtgcttcagtaaagtctgca
acaatttatgtaccgcggggaagatacttgctcggggctgcatcattctggggaaataca
tgcaagaataatgcgattaaaataagtatagatggtactcttgtagctccctcgaattat
cgtactattggctatgctggcaactggctcaagtttgaaagagtcaatggagtgacaatt
tctggcggaactttagatggacaaggcattagtctttggaactgcaaagcctccaagagt
aactgtcctggtggtgcaacgacattggcattctacaattcaaataacattgtcatcagc
aaattaacgtcactgaacagccaaatgttccatgttatgctttacggctgtcaaaatgct
aagctacaaggaatgaagatctcagcctcagccactagtccaaatactgatggcattcat
atatcagggtcctcaggtgttaccatattgggctctaacatagctacaggggacgattgc
atttcaattggccccggcgcctccaatttatggattgagaatgtttcttgtggccctggc
catggaataagcattgggagtctaggatgggatatgcaagaacctggagtacaaaatgtg
actgttaaaactgttactttcagagatacacaaaatggtttgaggataaagacttgggca
aggcctagcaatggatttgttaagagggtccttttccaaaatgcagtaatgctgaatgtg
agataccctattatcatcgaccaaagttattgtccaaccaaaaataattgtccaaatcag
ggttctggtgtaaagatcagtgatgtgacttatcagcaaattcatggaacatcatcatca
caagtagctatagcaattggttgcagcaacgactccccctgcagtggcataagattgcaa
gatgtcaacctcagatacatgaatcaaccagctcaggcatcatgctccaatgttgctgga
acttcttcaggctttgttcaaccaaaaggctgcttatga
DBGET
integrated database retrieval system
