Coffea arabica (coffee): 113735305
Help
Entry
113735305 CDS
T11342
Name
(RefSeq) E3 ubiquitin-protein ligase UPL6-like isoform X1
KO
K10589
ubiquitin-protein ligase E3 C [EC:
2.3.2.26
]
Organism
carb Coffea arabica (coffee)
Pathway
carb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113735305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
carb04121
]
113735305
Enzymes [BR:
carb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
113735305
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
HECT type E3
113735305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Motif
Other DBs
NCBI-GeneID:
113735305
NCBI-ProteinID:
XP_071937734
UniProt:
A0ABM4X125
LinkDB
All DBs
Position
3c:complement(359306..377433)
Genome browser
AA seq
1033 aa
AA seq
DB search
MFFSGDSSTRKRVDLGGRSSKERDRKKLVEQTRFERNRRLQLRQNNSAALKIQKCFRGRK
LVEAERSEVRERFFTRFGKHFQIVDRQCFGPDSDFLRWLLFFFNPKNAADCSALVEVCQL
LQKLDQDNVLDIISLFAGADYPSNKALVEYRVKKFALACIQAIYENRIQLRDQLMASKHS
GAPAILLLDALHLLIDDRLPWACNTVSYLLQRNVFSMFRNVILTLKEVAIQGLVGDVSSL
ERVLALIISHVGQTPCVCPNVDPSWSFSSQLLTIPFLWRLFPHLKETFGAPRLSQQYFHQ
MALCVKNHKNVLPEDISSDFPSFACLLGNILEAAGVAFTQPESFDMAVDFVTLATFLLEA
IPPIKTLNEGGKQNSNTYDDEMLVDDERAEKVLNGDLELQIYNAIDPRFLLQLTNVLLGG
VSLANNSYIGGPNDKEAAAVGAACAFLHVMFNILPLERIMTVLAYRTELVLVLWNFMKCC
HDNCKWSSLSKLSAYLPEDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLPLDDIRC
LIVIIRQALWQLLWLNPVAPPNFSKSPVDTFAMKKHPLEFLQHRVCVTASELLSQLQDWN
NRRQFTPPSDFHADGVNDYFISQATMENTKANDILKLAPFLVPFTSRAKIFASQLVAARE
RNIPHVPYVRNRFRVRRDHILEDAFDQLNALTEEDLRGLIRVTFINEFGAEEAGIDGGGI
FKDFMENVTRAAFDVQYGLFKETADHLLYPNPGSGLVHEQHLQLFHFLGTVLAKAMFEGI
LVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEGDISGLELYFVIVNNEYG
EQAEEELLPGGKNLRVTNENVITFIHLVANHRLNFQIRQQSSYFLRGFQQLIQKEWIDMF
NEHELQLLISGSVDGFDLDDLRAHTNYAGGYHQEHYVIEMFWEVIKCFSLENQRKFLKFV
TGCSRGPLLGFKHLEPLFCIQRAAGSASEEALDRLPTAATCMNLLKLPPYRSKEQMEQKL
LYAISAAAGFDLS
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtttttctccggcgattcatcgaccaggaagcgagtggatttaggcggacggagttcc
aaagaaagagaccggaagaagcttgtggagcaaactaggttcgagaggaatcgccgcctc
cagttgcgtcagaacaactctgctgctctcaaaattcagaaatgctttagagggagaaag
cttgtggaggctgaacgttcagaagtacgagagaggttttttaccagatttggcaagcac
ttccagattgtggacaggcaatgctttggtccagattctgattttctccgctggctactt
ttcttttttaaccccaaaaatgctgctgattgttctgcccttgtggaagtttgtcagttg
cttcagaagttggatcaagataatgtgctagatattataagcctctttgctggtgctgac
tatccatccaataaagccctggtggagtacagggttaagaaatttgctttggcatgtatt
caggcaatttatgagaataggatccagttgagagaccaactaatggcatctaaacattct
ggtgctccagcaattctcttgttagatgcattacatctattgattgatgacagacttccc
tgggcttgtaacacagtcagctatcttttacaaagaaatgtattttccatgtttagaaat
gtcattctgacgctgaaggaagtagctatccagggccttgttggtgatgtatcttctttg
gaacgtgttctggccctcattatatctcatgtggggcaaacaccttgtgtttgtccgaat
gttgacccaagttggagtttctcatcccagcttcttacaattcctttcttgtggcgtctt
tttccgcatctaaaagagacttttggagctcctaggttgagtcagcagtatttccatcag
atggccctctgtgtgaaaaatcataagaatgttctacctgaagatatatcaagtgatttt
cctagtttcgcctgtcttcttggaaatatattagaagctgctggagttgctttcactcag
cctgagtcatttgatatggctgtagattttgtgactcttgcaacatttttgttggaagca
attccacccatcaaaacattgaatgaaggaggtaaacaaaattccaatacttatgatgac
gaaatgcttgttgatgatgaacgagcagaaaaagttctaaatggtgatttggagctccag
atttataatgcaatagatccacgctttcttttgcaattgacaaatgttttgttgggtggg
gtttcgcttgccaataattcatatataggtgggcccaatgataaagaggctgcagctgtt
ggtgctgcttgtgctttccttcatgttatgttcaacatcctgcctctagagcgcatcatg
actgtgctagcttatagaacagagttggttcttgtgctttggaacttcatgaaatgctgc
catgacaactgtaaatggtcatccttgtccaagctgtctgcatatttgcctgaagatgca
cctggttggttactacctttggctgttttctgccctgtttacaagcacatgcttatgatt
gttgataatgaagagttttatgagcaagagaagccactgccactggatgatatccgatgc
ttgattgttattataagacaggccttgtggcaactcctgtggctgaatcctgtggcacca
cctaatttttccaagtcccctgttgacacctttgccatgaagaagcacccattggaattt
cttcagcatagagtttgtgttacagcttctgagctcttgtcgcagttgcaagattggaat
aacagaaggcaatttacacccccaagtgattttcatgctgacggtgtcaatgattacttt
atctctcaggcgaccatggaaaatactaaagcaaatgatatactaaaactagctcccttc
ttggttccatttacgagcagagctaaaatatttgcgtcacagcttgttgcggcaagggaa
aggaatatacctcatgtcccctatgttaggaacaggttcagagtaagaagagatcatatc
ttggaagatgcttttgatcagttgaatgccttgactgaagaggatcttcgaggactgatt
cgtgttacttttatcaatgaatttggagcggaggaggctggaatcgatggtggtggtatt
ttcaaggattttatggaaaatgttactagagcagcctttgatgtacagtacggattattt
aaggaaacggcggatcacctactgtatcccaatcctggatcaggactagtacacgaacag
catctccagttgtttcactttcttggaactgttcttgctaaggcaatgttcgagggaatt
cttgttgatataccatttgcaaccttctttctgagcaaattgaagcaaaagtacaattac
ttgaatgatttgccttccttggatccagaattatatcggcatctgatatttctgaagcat
tatgaaggtgatatctcagggttagagttgtactttgttattgtcaataatgaatacggg
gagcaagcagaagaagagctgcttcctgggggaaagaatttacgggtgacaaatgaaaat
gtcatcacatttattcatcttgtagccaaccatcgtttgaattttcagatacgccaacaa
agttcttatttcttgagggggtttcagcagcttatacagaaagaatggattgacatgttt
aatgagcatgaacttcagcttttaatatctggatcagttgatggctttgatcttgatgat
cttcgagctcataccaactatgcagggggctatcatcaagagcactatgtcatcgagatg
ttctgggaagttatcaaatgcttctctttggaaaatcagaggaaatttttgaagtttgtt
actgggtgttctcgagggcccttgcttgggtttaagcacttggagccgttattctgcata
cagagggctgctggcagtgcttctgaagaagctcttgaccgattaccaacagcagctact
tgcatgaatcttctaaagcttcctccatatagaagcaaggagcagatggaacagaagttg
ctatatgccattagtgcagcagctggttttgatctgagctaa
DBGET
integrated database retrieval system
