Coffea arabica (coffee): 113736047
Help
Entry
113736047 CDS
T11342
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Module
carb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113736047
Enzymes [BR:
carb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
113736047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
113736047
NCBI-ProteinID:
XP_027118801
UniProt:
A0A6P6WVW7
LinkDB
All DBs
Position
3c:44016943..44018670
Genome browser
AA seq
390 aa
AA seq
DB search
MAKGNRVSSILFLSCATLLSITRAASFNVLSFGAKPDGRTDSTQPFLKAWASACRSIQPA
TVYVPRGRYLIKAAVFKGPCRNRITVKIDGTLVAPDNYWALGNSGYWLLFIQVSRLSVIG
GTLDAKGAGFWACRQSGKNCPVGARSITFNWVNDGLISGLTSINSQLMHVVVNSCKDVKV
QNVRIVAPDLSPNTDGIHVQGSTGVTVTGSSIKTGDDCISIGPGTRNLWMEKIQCGPGHG
VSIGSLGRDFNEDGVQNVTLTNSVFTGADNGLRIKAWARPTTAFVSNINFRNIIMKNVDN
PIIIDQNYCPNNQGCPRQTSGVKINQVTYQNIRGTSTTQVAVIFDCSPSNPCRGIRLHDI
KLTYLNRKAQSFCKNIGGTTKGVIIPESCL
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggctaagggcaatagagtttcatccattcttttcctttcttgcgcaacccttttgagc
ataacaagggcagcatccttcaatgtgctcagttttggagcaaaaccggatggcagaact
gactcaactcagccattccttaaggcctgggcgtcagcttgtaggtcgatccaaccggcc
actgtttatgtccctcgagggcgttacctgataaaggcagcagtgtttaaaggaccctgt
agaaacagaatcactgtgaagattgatgggactcttgttgctcctgataactactgggct
cttggcaactcgggatactggctattgttcattcaggtcagtaggctttcggtcatcggc
ggaacactggatgctaagggagcagggttctgggcatgccgccagtcagggaagaactgc
ccagttggagcaaggtctataacattcaattgggtgaatgatgggctgatcagcggcttg
acatcaatcaacagccagcttatgcatgttgtggttaacagctgcaaggatgtaaaagtt
caaaatgtaaggattgtagctccagacctgagcccaaatactgacggcattcatgtccaa
ggctcaacaggcgttaccgtcactggcagtagcattaaaacaggcgacgactgcatatca
attggtccaggaacaagaaacctgtggatggaaaagatacagtgtggccctggacatggc
gtcagcattgggagtttgggcagggacttcaatgaagatggtgtgcagaatgtgacactc
acgaattcggtgttcactggagctgataatggattaagaattaaagcatgggcaaggcca
acaactgcatttgttagcaatatcaactttcgaaacatcatcatgaagaatgtggataat
cctataatcattgatcagaattactgcccaaacaaccaaggatgtcctcgtcagacttct
ggtgtaaagattaatcaagtcacataccaaaacatacgaggcacatcaactactcaggtt
gctgtgatatttgattgtagtcctagtaatccatgccgaggtatcaggctgcacgacatc
aagctcacctatttgaacaggaaagcacaatcattttgcaagaacatcggagggactaca
aaaggagtcataattccagaaagttgtttataa
DBGET
integrated database retrieval system
