Coffea arabica (coffee): 113736464
Help
Entry
113736464 CDS
T11342
Name
(RefSeq) polygalacturonase isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Module
carb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113736464
Enzymes [BR:
carb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
113736464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
ZirS_C
NosD
Beta_helix
Motif
Other DBs
NCBI-GeneID:
113736464
NCBI-ProteinID:
XP_027119267
UniProt:
A0A6P6X0G6
LinkDB
All DBs
Position
3e:48493804..48496209
Genome browser
AA seq
391 aa
AA seq
DB search
MEKPISLFTVTLLFLLFNQSLAIPGTYNILELGAKPDGKTDSSKSLLSAWAAACGSTKPA
TIFVPKGRYFVKQAQFRGPCKNRAISFRIDGTLVAPSDYKAIGNADFWLQFHRVDGVSIR
GGILDGQGTGLWGCKASGKNCPTGTTTLGFTNSNNIAIAGLTSLNSQLFHLVFNGCNTVK
LQGVKVSAAGNSPNTDGIHVQYSSGVTILNSKISTGDDCVSIGPGTTSLWIENVLCGPGH
GISIGSLGKDFEEEGVQNVTVKSVTFRNTQNGARIKSWGRPSKGFVKDVLFQHATMINVQ
NPILIDQNYCPDNINCPGQVSGIKINDVTYQDIHGTSATEIAVKFDCSKKNPCSGIRLED
VKLTYKNQPAKTSCANAAGTKLGLLGTNSCL
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcccattagtctttttactgtaacacttctcttcttgttgttcaatcaatca
ttggccattcctggcacgtacaacattttagagttgggagcaaaacctgatgggaaaact
gattcatccaagtctttattaagtgcatgggctgcagcttgtggctctaccaagccagcc
acaatttttgtaccaaaaggaaggtattttgtgaagcaagcacaatttcgaggaccatgc
aagaatagagctataagctttagaatagatggtaccctcgtggctccttcagattacaaa
gccattggaaatgctgatttctggcttcaatttcacagggttgatggagtttccattcgc
ggtggcattcttgatggccaaggtactggtctctggggttgcaaagcctccggcaagaat
tgtccgaccggcacaacgacattgggatttaccaactcaaacaacattgcaattgccggc
ctaacttctctcaatagccaattgttccacttggtgttcaacggctgcaacaccgtgaaa
ttgcaaggagtaaaggtttcggcggccggaaacagccccaacacggacgggattcatgtg
caatattcatcaggagtcacaatcttgaattccaagatcagtactggagatgactgcgtt
tcaattggtcctggcactacaagtttgtggattgaaaatgttctttgtggccctggccat
ggcatcagcattgggagtcttggaaaagattttgaagaagagggagtacagaatgtgaca
gtgaaaagtgttaccttcaggaatacacagaatggtgcaaggattaaatcatggggtagg
ccaagcaaaggttttgtcaaggatgttttgttccagcatgccactatgatcaatgtccaa
aaccccatcctaattgaccaaaattattgcccggataacatcaattgtcctggacaggtt
tcaggcataaaaataaacgatgttacgtatcaagacatccatggaacatcagcaacagaa
attgcagtcaaatttgattgtagcaagaagaatccgtgcagtgggataagattggaagat
gtgaaattgacatacaagaatcaaccggctaaaacatcttgtgccaatgctgctggaact
aaacttggtttgcttggcactaatagctgtttgtag
DBGET
integrated database retrieval system
