Coffea arabica (coffee): 113736999
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Entry
113736999 CDS
T11342
Name
(RefSeq) protein CHROMATIN REMODELING 35-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113736999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113736999
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
113736999
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
113736999
NCBI-ProteinID:
XP_071906879
UniProt:
A0ABM4UHX7
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Position
1c:5228375..5238927
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AA seq
1188 aa
AA seq
DB search
MASKSEGSQSSSTTPIAKRRLSFSSITTGLTSKEQKRAKVGEVGECSSRNFSACWCHDFK
WKDQKVCPTVLGHEDPFSADNLLEDLDINRYGNVKKDIEYLIARRNQLISHGFAAKPLVP
CKNLSTQKIPKKIDFGSDRYGSVTREIEELLAQSQLFGCLSSTNSTMSCKRLKKYLTKED
LESNPPSMPNIIDLEDDDEPPANGTVIKCEPAEEIDTSAKCLVVIDSVEEDPENDHNFCH
SRSSATKPVVQCWNLGVKKRPSEEDFQSNKYGSVTKEIEELLAQENQVFGVLGSTNSAML
RKRLGTEMYSCKEGWDLKPPSVPDIIDLESPDNGTIVESEPFEEIVREAKPLAVIDLDDE
AFENDENSCPNEVADLAKTADNLLQNNVEDQSSAEDQKLRRENSFHGSNIEFKKVEQDLD
AADDHKFESEKSCHGSNLASNLKCAEEGKLGKGNSYLGDKPELKKHNGLNPRAEAKAEMV
EDKRQTKANAPVSPKISEVEKDKGVYVGVEGDAEHEEGSPQHDSEYGGLGSIWNELSFAL
ECSKDTAVDSSSDKHTIVGAEDCDHSFILKDDIGSVCRVCGLIERGIETIIEYQYAKAKK
SERTYRYERSLRNGLEQTKILPESIRWVEHEDSLTEVAVHPRHRKVMKPHQVEGFNFLTS
NLVTDHPGGCIMAHAPGSGKTFMIISFLQSFMAKYPSARPLIVLPKGIISTWKKEFQRWQ
VEDIPLYDLYSSKSESRSQQLVILKRWANERSILFLGYAQFALIVCDMDMNETTLGCRDI
LLTCPSILILDEGHTPRNQNTDILKSLEQVQTPRKVVLSGTLYQNHVREVFNVLNLVCPK
FLKMGTPKVIKRRILSKVQISSGRSSIAKFSDDDFYNLVECTLLEDEKFNRKVNIVQDLR
EMTSKVLHYYKGDFLDELPGLVDFTVFLELSRAQKKEVAELKELKSRFKINSEGSAIYVH
PQLKKLLMYSGVKDRVDVEKIDLMLEKLKETEGIKAKFYLNLLQLCESTGEKLLVFSQYL
LPLKFLERLTVKVKNYSLGKEMFVITGDSDSEIRDSCMEQFNNSSDARVFFGSIRACGEG
ISLVGASRIIILDIHLNPSVTRQAIGRAFRPGQQRKVYTYRLVASGSPEEDDHLTCFRKE
SIAKMWFEWNGCQGQEDFQMENVDVNDCGDLFLESSQLNQDVVSLYRR
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggcctcaaagtctgaagggtcacaaagcagtagcacgaccccaattgccaaaaggcgt
ctatccttcagctccatcactactggtttgacttccaaggagcagaaaagggctaaagtt
ggtgaagtaggagagtgcagttccagaaatttttctgcttgttggtgtcatgacttcaaa
tggaaggaccagaaggtctgtcccacagtattaggtcatgaagatccattttctgccgac
aatttgctagaagatttggatatcaacagatatggaaatgtgaagaaggatattgagtat
ctaattgctagaaggaatcagttaatttcacatggatttgcagcaaagcctctggttcca
tgtaaaaatctgagcacacaaaagattcctaaaaaaatagattttggatcagacagatat
ggaagcgtaacaagggaaattgaggagctattagctcagagtcaattatttgggtgcctg
tcttcaacaaattctacaatgtcatgtaagcgtttgaaaaagtatttaaccaaagaagat
ttggagtcaaaccctccttctatgccaaatattattgatttggaggatgacgatgaacct
ccagctaatggtacagttatcaagtgtgaaccagctgaagagatagacacatcagctaag
tgccttgttgtcattgactcagtcgaggaagaccctgagaatgaccacaatttttgtcat
tcacgcagctctgcaacaaagcctgttgttcaatgttggaatcttggtgtaaaaaagagg
cccagtgaagaagattttcagtcaaacaaatatggaagtgtaacaaaggaaattgaggag
ctcttggctcaagagaatcaagtatttggggttctaggttcaacaaattctgcaatgttg
cgtaagcgtttgggtacggaaatgtattcatgcaaagaaggttgggacttaaagcctcct
tctgtgcctgatatcattgatttggaatctcccgataatggtacaattgttgagtctgaa
ccatttgaagagattgtcagagaagctaagcctcttgctgttattgacttagatgatgaa
gcctttgagaatgacgagaattcttgccctaatgaggttgctgatttggcaaagactgct
gataatcttctgcaaaataatgttgaggatcaaagtagtgctgaggaccagaaattgaga
agagaaaattctttccatggtagcaatattgaattcaagaaagttgaacaagatctagat
gctgctgatgaccataagtttgaaagtgaaaaatcttgccatggtagcaatcttgcaagt
aatctaaagtgtgctgaagaagggaagttgggaaaaggaaattcctaccttggtgataaa
cctgagcttaagaagcataatggtttaaatcccagagcagaggctaaggctgaaatggtg
gaggacaagaggcagacaaaggcaaatgctcctgtttcacctaaaatttctgaagttgag
aaagacaaaggtgtgtatgttggtgtggagggtgatgcagaacatgaggaaggcagtccc
caacatgattctgagtatggtggtctggggagtatatggaacgagctatcatttgcatta
gaatgttccaaggatactgctgtagattcttcatctgataagcacaccattgtgggtgca
gaagattgtgatcattcattcatcttgaaagatgatataggttctgtctgccgagtttgt
ggattgattgagagagggattgaaaccataattgagtatcaatatgcaaaggccaaaaag
agtgaaagaacttatagatatgaacgttccctccgaaatggccttgagcaaactaaaatc
cttcctgaaagtattagatgggttgaacatgaagactctttgacagaagttgctgtccat
ccacggcatcggaaggtaatgaaaccgcatcaagttgaggggttcaattttctgacaagc
aacttggtgacagatcatcctggtggttgtataatggcacatgccccaggatcggggaaa
acttttatgatcattagtttccttcagagtttcatggctaaatatccttctgcaagacca
ttgattgtactgccaaagggaatcatatcaacatggaagaaagaattccagagatggcaa
gtggaagatataccgctatatgatctctactcatccaaatcagaaagtaggagtcagcag
ctagtaattttgaagagatgggcaaacgaaagaagcattttgtttctgggatatgcgcag
tttgctttgattgtatgtgacatggatatgaatgaaacaactcttggatgtcgggatata
ttgttaacttgcccttctattcttatcttggatgaaggtcacactcccagaaaccaaaac
actgatattttgaagtctcttgaacaggtacagacacctcgcaaggttgtactttctggc
accctttatcaaaaccatgtcagggaagtcttcaatgttttgaatcttgtttgtccaaag
tttctgaaaatggggactcctaaagtcattaaaaggcgcatcttgagtaaggtacaaata
tcaagcgggaggagttctattgcaaagttttctgatgatgacttctataacctggtggag
tgcacgctccttgaagatgagaaattcaataggaaagtgaatatcgttcaagatctgcgg
gagatgacaagcaaagttcttcactactacaagggagatttcttggatgaactacctgga
ctagttgacttcactgtctttcttgaactcagccgtgcacaaaagaaagaagttgcagag
ctgaaggaactgaaaagtaggttcaaaataaactctgaaggaagtgctatctatgtgcac
ccgcagttgaagaaacttttgatgtattctggagttaaagatagggttgatgtggagaag
attgatctaatgttggagaaactgaaagagactgaaggaataaaggccaaattctaccta
aatcttctccagctatgtgaatccactggcgagaagttgctagttttcagtcaatatctt
ctccctctaaagttcttggagagactgactgtgaaagttaaaaactatagtcttggaaaa
gaaatgtttgtgatcactggtgactcagattctgaaattcgagattcttgcatggagcaa
ttcaataattcttcagacgctagagtctttttcggatcaattagagcttgtggtgaagga
atatcacttgtaggagcatcacgcattattatactggatatacatctaaacccctcagtc
acccgccaggcaattggacgtgcatttcgacctgggcaacagaggaaagtgtacacctac
agattggttgcctctggttctccagaagaggatgaccatttaacttgcttcagaaaggag
tctattgcaaagatgtggtttgaatggaatggatgtcagggtcaagaagattttcagatg
gaaaatgtcgatgttaatgattgtggtgatttgtttctagagtcatcacagttaaaccaa
gacgtagtctctctttacagaaggtaa
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integrated database retrieval system
