Coffea arabica (coffee): 113737599
Help
Entry
113737599 CDS
T11342
Name
(RefSeq) ATP-dependent RNA helicase HAS1-like
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113737599
03009 Ribosome biogenesis [BR:
carb03009
]
113737599
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113737599
Spliceosome [BR:
carb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113737599
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
90S particles
Helicases
113737599
Pre-60S particles
113737599
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
AAA_22
ERCC3_RAD25_C
SecA_DEAD
Cas3-like_C_2
Helicase_C_2
DUF2340
Motif
Other DBs
NCBI-GeneID:
113737599
NCBI-ProteinID:
XP_027120605
UniProt:
A0A6P6WZ50
LinkDB
All DBs
Position
3e:38170888..38180348
Genome browser
AA seq
576 aa
AA seq
DB search
MCMYTYSRNQEGKSGHRLSCTNSWSWSCCGYEDDDEETQKTPLRKRETWRKQNQAGKYGE
GERISEDQVEEMGKEQKKESDIMSMDLFTSLPLAESTTKAIADMGFKYMTQIQARAIPAL
LDGKDVLGAARTGSGKTLAFLIPAVELLYQTQFTPHRGTGAIVICPTRELAIQTHTVAKE
LLKYHSQTLGLVIGGLGRSSLKEEAVRLVKGVNLLIATPGRLLDHLQNTKDFTYRNLKFL
IVDEADRILEANFEEEIRKIVNILPQKRQTALFSATQTVKVYDLARLSLQGNLIYIGVDD
EQKKVTNDGLKQGYCVIPSEKRFTLLYSFLKRNSSKKVMVFFSSCDSVKFYSDLLKYIGI
DCHDIYGKKKQHKRNSTLDDFRKAEKGILLCTDVAERGLDIPAVDWIVQYDPPKEPKKYI
HRVGRTARGEGAKGNALLVLIPEELQFLCQLKAAKVPLTEYEFDEKKLKNVQPHLEKLIA
NNYYLNKSAKDAYKSYILACHSHSMKDIFNVHRLILQAVAASFGLSKIPNVNLKIDSNAL
KFWSKRRRIVGKWHSFSKSNPYGRVVEDNTRQFVRY
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtgcatgtatacatattctcggaatcaagaaggaaagagcggccacagactaagttgc
acgaattcttggagttggtcctgttgtggctatgaagatgatgatgaagaaacgcaaaag
accccgttacgcaaaagagaaacctggagaaagcaaaaccaagcaggaaaatacggggaa
ggagaaagaattagtgaggatcaagtggaggagatgggtaaagagcaaaagaaagagtca
gacattatgagcatggatttgtttacgtcgttgccattagcagaatcaactacgaaagct
attgctgacatgggtttcaagtatatgactcagattcaagcaagagcaattccggccctt
ctagatggaaaagatgttctaggagctgcaagaacaggatctgggaaaacacttgctttc
ttgatacctgctgtggagttgttgtatcaaactcaatttactcctcaccgagggactggt
gcaattgtcatatgtcccaccagagagttggccattcagactcacactgttgcaaaagag
cttctcaagtatcattcacagactcttggcttggtaattggaggtttgggtcgttcgtct
ctgaaggaagaggcggtacgtcttgtaaaaggagtgaacctgttaatagcaacacctggt
cggctcttagatcatctacaaaacacaaaggattttacatacagaaatctaaagttcctc
atagttgatgaagcggataggatattggaagccaattttgaagaagaaataaggaaaatt
gttaatatcttgccacagaaaaggcaaacagctcttttctctgccacacagacagtgaag
gtttatgatctcgcacgcttatcccttcaggggaacctcatctacattggtgttgatgat
gaacagaagaaggtcaccaatgatggtctgaagcaaggatattgtgtcattccaagtgaa
aagagatttactcttctctattcctttttaaagaggaattcatcaaagaaagtgatggtt
ttcttttcttcatgtgattctgtcaagttctattctgatcttctcaagtacataggcatt
gattgccatgatatttatggaaagaagaagcagcacaaacgaaactccactctggatgac
tttcgcaaagcagagaaagggatattgttatgtacagatgttgctgaacgtggtctggac
atccctgccgtggattggattgtgcagtatgatcccccaaaggagccaaagaaatacatt
cacagggttggtcgaacagcacgtggggaaggtgcaaaaggcaatgctctacttgttttg
attccagaggaactgcaatttctgtgccagctaaaggctgcaaaagtaccactcacagaa
tacgaatttgatgaaaagaagctgaaaaatgtgcagcctcatttggagaagttgattgca
aacaactattatttaaacaagtcagccaaagatgcatataaatcctacattcttgcttgt
cactcacattccatgaaggatatcttcaatgttcatcgattgattctgcaggctgtggct
gcttcatttggtttatctaagattccaaatgtaaatctgaagatagacagcaacgcatta
aaattttggagtaaaaggcgcagaattgtgggaaaatggcacagtttcagcaaaagcaac
ccttatgggagggtggttgaagataatacgcggcagtttgtgagatactaa
DBGET
integrated database retrieval system
