Coffea arabica (coffee): 113738246
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Entry
113738246 CDS
T11342
Name
(RefSeq) vacuolar sorting protein 39-like isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
carb Coffea arabica (coffee)
Pathway
carb04142
Lysosome biogenesis
carb04145
Phagocytosis
carb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
113738246
04142 Lysosome biogenesis
113738246
04148 Efferocytosis
113738246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
carb04131
]
113738246
Membrane trafficking [BR:
carb04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
113738246
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_WDR35
zf-HC5HC2H
AlaDh_PNT_N
Motif
Other DBs
NCBI-GeneID:
113738246
NCBI-ProteinID:
XP_071940428
UniProt:
A0ABM4X8R1
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Position
3e
Genome browser
AA seq
1007 aa
AA seq
DB search
MVHSAYDTFQLVHNSPIKIDAIESYGSNLLLACSDGSLRIYGPEFSSSPTSDRSPTSSDF
HPHELKKEAYALDRTINGFSKKPMLAMEALSSRELLLSLSESISFHRLPNLETMAVITKA
KGANAYSWDDRRGFLCFARQKRVCIFRHEVGRGFIEVKEFGVPDTVKSMAWCGENICLGI
RREYVILNSASGALSEVFPSGRIAPPLVVSLPTGELLLGKDNIGVFVDQNGKLLQEGRIC
WSEAPAVVVIQKPYAIGLLPRHVEIRSLRDPYPLIQTVVLRTVRRLLQSNSAIIVALDNS
VHGLFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRAAKEQSIHIRYAHYLFENGC
YEEAMEHFLASQVEITHVLSLYPYVVLPKSSLIPEPEKFLDVTGDASYLSRGSSGMSDDM
DSPPSHLLESDENADIESKKISHNTLMALIKFLQKKRYSIIEKAAAEGTEEVVLDAVGSN
FISYGSTRAKKASKGRGNVPISSVARDLAAILDTALLQALILTGQSSSAVELLKGLNYCD
VKICEEFLQKWNQYVGLLELYKRNAMHREALKLLHQLVEESKSEQPRMELSQKFKPEMII
DYLKPLCGTEPMLVLEFSMLVLESCPAQTIDLFLSGNIPADLVNSYLKQHAPDMQATYLE
HMLAMNENGISGSLQNEMVQIYLSEVLDWYADLNAQGKWDEKSYTPRRKKLLSALENISG
YNPEVLLKRLPPDALNEERAILLGKMNQHELALSIYVHKLHVPELALAYCDRVYESGLNQ
QSGKPYGIYLTLLQIYLNPQKTIKNFEKRISNLVVSQSPGIPKIGPGPLAKTKGRASKKI
AAIEGAEDSRISPSSTDSGRSDGDADDAVEEGASTIMLDQVLDLLSRRWDRMHGGQALKL
LPKETKLQNLLPFLGPLLRKSSEAYRNFSVIKSLRESENLQVKDELYEQRKTAVKITGDS
MCSLCHKKIGTSVFAVFPNGKTIVHFGCFKDSQNMKAVSKGSSARKR
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggttcatagtgcttatgatacattccagcttgtccataattccccaatcaaaatcgac
gcaatcgaatcctacggctcgaatttactgctcgcctgctccgatggatcgctcagaatc
tacggtccagaattctcctccagtcccacttccgaccgatctcctacctcctccgatttc
cacccgcacgagctcaaaaaggaggcttatgccctcgaccgaacaattaatggattctcg
aagaagccaatgctcgcaatggaagctctcagctcgcgagagcttttgctttcgctctcg
gaatcaatatcgtttcatcggttgcccaatttggaaaccatggctgtgattacgaaagcg
aaaggggcaaatgcttactcgtgggatgatcgccgagggtttttgtgctttgcccggcag
aagagagtttgtatttttaggcatgaggtcggaagggggtttatagaggtgaaagaattt
ggtgttccagatacagtgaagtcaatggcttggtgtggggagaatatctgtttggggatt
agaagagagtatgtgatactaaattcagcaagtggtgcattgtctgaggtgtttccttca
gggcggattgctccacctctagtggtctctcttccaactggggagcttcttctaggaaag
gataacattggagtgtttgttgaccaaaatgggaagcttcttcaagaaggccggatttgt
tggtcagaggcaccagcagttgttgtcattcagaagccatatgcaattggtctcttacca
agacatgttgagatacgttctctgcgagacccctatccactgatacagacagtggtcctc
cgaactgttcgtcgtctccttcaaagtaatagtgctataattgttgcacttgacaactct
gttcatggattatttcctgttcctcttggtgcacagattgtacaactaactgcatctggc
aattttgaggaagcattggctttatgtaaattactaccaccagaagattcaagccttcga
gctgcaaaagagcagtcaattcatattaggtatgcacactatttgtttgagaatgggtgc
tatgaggaggccatggaacacttcctagcttctcaagtggaaattactcatgtgctttct
ttgtatccatatgttgttcttccaaaatcatccctaatccctgagccagagaagtttctt
gatgttaccggagatgcctcgtatctctcaagaggttcttctggcatgtcggatgatatg
gattctccaccttctcatttgctggagtctgatgagaatgctgatatagaatccaagaaa
ataagccacaatactctcatggctcttattaagtttttgcagaaaaagaggtatagtatt
atagaaaaagctgcagctgagggaactgaggaggtggtattagatgcagttggaagcaac
ttcatttcttatggaagtactcgggctaaaaaagcaagcaaaggcagaggtaatgtcccc
atcagctcagttgctagagatttggcagcaatactggatactgcgctgcttcaagctctg
attttaacgggacagtcttcatcggctgtggaattattaaaaggtctcaactactgtgat
gtaaaaatttgtgaggagtttttgcagaaatggaatcagtatgttggtttgttagaactt
tacaaaaggaacgctatgcatcgtgaggctcttaaactccttcatcaattagttgaagaa
tcgaagtcagagcaaccgcggatggaactgtcccaaaagttcaagcctgagatgattata
gattatcttaaacctctttgtggaactgaaccaatgcttgttctggagttctcaatgcta
gttcttgaaagttgtccggcacaaactattgacctcttcttgtctggaaatattcctgct
gacttggttaactcttacttaaagcagcatgctccagacatgcaggcgacatatttggaa
cacatgcttgcaatgaatgaaaatggaatctctggaagtcttcagaatgaaatggtgcaa
atttatctttcggaagtgcttgattggtatgcggatcttaatgctcaaggaaagtgggat
gagaaatcatacacccctcggaggaagaagttgttgtctgccttggagaacatctctgga
tataatcccgaggtattgttaaagcgactcccaccagatgcattgaatgaagagcgtgcc
atccttctgggaaaaatgaatcaacatgaacttgcactgtctatttatgttcataagctg
catgttcctgagttggcattggcttattgtgatcgggtgtatgaatctggactcaatcaa
caatcaggaaagccttatggcatataccttactttactgcaaatctatctgaatccacag
aagacaataaaaaacttcgaaaagagaatcagtaatttggtagtgtctcagagccctggt
attccaaagattggacctgggcctttggctaaaacaaaaggacgagcatctaaaaaaatt
gcagcgattgagggtgctgaggacagccgaatcagccctagcagcactgacagtggaagg
agtgatggtgatgcagatgatgcagttgaagaaggagcttctactatcatgctagatcag
gtccttgatctgttgagccgaaggtgggatcgaatgcatggaggacaggctttaaaattg
ctgcccaaggagactaagctacagaacttgcttccttttctcggacctcttctcagaaaa
tcaagtgaagcatatagaaatttttcggtgatcaagagtctaagagagagtgaaaaccta
caggtgaaagatgagctctacgagcaaaggaagacagctgtgaagataactggtgacagc
atgtgttctctttgccacaagaaaatagggactagtgtctttgcagtctttccaaatggt
aagaccattgtgcactttggctgctttaaggattcacagaatatgaaggccgtgtcaaaa
gggtcatcagcgcggaagagatga
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