Coffea arabica (coffee): 113739342
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Entry
113739342 CDS
T11342
Name
(RefSeq) probable polygalacturonase At1g80170
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Module
carb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113739342
Enzymes [BR:
carb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
113739342
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
113739342
NCBI-ProteinID:
XP_071901120
UniProt:
A0ABM4U1G4
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Position
4c:complement(51414614..51421168)
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AA seq
393 aa
AA seq
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MGVFIPILFAAFVLPSSVVAQSFVYNVLDYGAVGDGYNDDTNAFKHAWEAACTSTPDSSS
SAPTMQIPSNTSFFIQPVIFRGPCRSPIINVEISGELLAPVNPTDWRCIGGYCGMWIHFK
SLRGLRLYGGGRIHGRGEKWWQKLALEISDSDDVQITSLNFKDNPKMHLVLNNLRSVSVS
TIHIDAPADSKNTDGIHITGSTDVTIDSCKIGTGDDCVSIVNGSANVRVTNIFCGPGHGI
SIGSLGKHGAEDKVENIYVSDVVFRNTENGARIKSWQGGKGYARNIIYERIMLQDADNPI
IIDQFYCDHEKCKTQESAVQIHDITFRQVIGTSKNKVAVKLDCSETVPCSNIILNDIYIL
SSEDQSTTTSDCKNAHGTIQGRMVPNPSCLTKV
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgggagtttttatcccgatactgtttgcagcatttgttctcccttcctcggtggtggca
caatcatttgtgtacaatgttcttgattatggtgcagttggagatggctacaatgacgat
accaacgctttcaagcatgcatgggaagcagcatgcacgtccacaccagattcatcttct
tctgctccaaccatgcaaatcccttcaaatacaagtttcttcattcagccggtgatcttc
agaggcccctgtagatcgccaatcatcaatgttgagataagtggagaacttttagcacct
gtgaaccctacagactggaggtgcatcggtgggtattgtgggatgtggatccacttcaaa
agtttaagaggacttagactgtatggtggtggcagaattcatggccgtggagaaaaatgg
tggcaaaagcttgctttggagatttcagactcggatgatgttcaaataactagtttgaac
ttcaaggacaatcccaaaatgcatctggtcctcaacaatctaagatcagtttctgtctca
accatacatattgatgcaccagcagatagcaaaaacacagatggtatccatatcaccggt
tctacagatgttaccatagacagttgcaaaattggcactggcgacgattgcgtctcaatt
gtaaatggatctgcaaatgtgagggttaccaacatcttttgtggccctgggcatggcata
agtattgggagtttaggcaagcacggtgcagaagacaaagttgaaaacatctacgttagt
gatgttgtgttcagaaacacagagaatggtgctaggattaagtcgtggcagggtggcaag
ggttatgcaagaaatataatctacgagagaataatgttgcaggatgcagataatcccatt
atcattgatcaattctactgtgaccatgaaaaatgcaaaactcaggaatctgcagtgcaa
attcatgacatcacatttagacaggtgattggaacatcaaagaataaggtggcggtgaaa
ttagattgcagtgagacagttccctgtagcaatataattctgaatgatatttatattctt
tcaagtgaagatcagagtaccaccacttccgattgcaaaaacgctcatggaacaattcaa
ggacgaatggttcctaatccatcgtgtttgacaaaagtgtag
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