Coffea arabica (coffee): 113739444
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Entry
113739444 CDS
T11342
Name
(RefSeq) pachytene checkpoint protein 2 homolog
KO
K22399
pachytene checkpoint protein 2
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
carb03036
]
113739444
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Others
113739444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_lid_TRIP13_C
TRIP13_N
AAA
AAA_22
AAA_16
nSTAND3
AAA_18
AAA_14
NPHP3_N
Viral_helicase1
NACHT
TsaE
AAA_5
Cytidylate_kin
AAA_28
TIP49
AAA_2
ATPase_2
AAA_30
RuvB_N
DUF815
RNA_helicase
AAA_11
AAA_33
ABC_tran
PduV-EutP
KAP_NTPase
AAA_17
IstB_IS21
bpMoxR
AAA_7
Rad17
AAA_19
AAA_24
SLFN-g3_helicase
nSTAND1
AAA_3
NB-ARC
ResIII
Mg_chelatase
SRPRB
NTPase_1
CPT
nSTAND6
Motif
Other DBs
NCBI-GeneID:
113739444
NCBI-ProteinID:
XP_027122459
UniProt:
A0A6P6X4S4
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All DBs
Position
4c:complement(10734891..10740831)
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AA seq
474 aa
AA seq
DB search
MSSAPMDISIPDAAAELGHDVVDQQNGNVLEPPLSLPPPLPSPQPPPAIADDKIPVSVEV
CLKPTSTARIEDVRAAVERMLEHRNMSYVDGPIPVPLDDSFLIENVQRISVCDTDEWLDN
RDVLLFWQVKPVVHVFQLSEEGPGEDLNGDGQLSSFNEWMLPAKEFDGMWESLIYESGLK
QRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSVRFSIRYPQ
CQLVEVNAHSLFSKWFSESGKLVAKLFSKIQEMVEEENNLVFVLIDEVESLAAARKAALS
GSEPSDSIRVVNALLTQMDKLKTSPNVIILTTSNITAAIDVAFVDRADIKAYVGPPTLQA
RYEILRSSLQELLRTGIILSNPDMQDGHNVILSNFTGLKEKLNSTVLPESQSSLSLCRKL
LEAAEACEGLSGRSLRKLPFLAHAALANPYSCDPFRFLITLTETARRESAEMPD
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgccccaatggatatttcaattccagatgccgctgctgaacttgggcatgac
gttgttgatcaacaaaacggcaacgttttggagccaccgctttctcttccaccgcccctt
ccgtctcctcaacctcctccggcaatagccgacgataagattcctgtttcagttgaagtt
tgtctgaaaccaactagcacggctcgtattgaagatgttcgtgctgccgttgaaaggatg
ctggaacataggaatatgagctatgttgatgggcccattcctgtgccattggatgattca
tttcttattgagaatgtacaacgcatttcagtttgtgacacagatgaatggctggataac
cgtgatgttcttttgttctggcaagtcaaacccgttgtgcatgtttttcagctaagtgaa
gaaggacctggtgaagacttaaatggtgatggccaactttctagcttcaatgaatggatg
cttcctgcaaaggaatttgatggcatgtgggaaagcttgatatatgaatctggtctcaag
cagagattattgcgttatgcagcaagtgctttgctttttactgaaaagggtgttgaccct
tttcttgtttcttggaaccgtatcattcttctgcatggacctccaggaacagggaaaaca
tctctctgcaaagcactagctcaaaagctctctgtacgatttagcatcagatacccacaa
tgccagttggttgaagtaaatgcacattccttatttagtaaatggttttctgagagtggc
aagttggtagcaaagctattctcaaaaattcaagaaatggtggaagaagaaaacaacctg
gtatttgttttgattgatgaagttgaaagccttgctgctgcaagaaaggctgcattgtct
ggttctgagccatcagattctataagggtcgtgaatgcgctactgacccagatggacaaa
ctaaagacctccccaaatgtgataatattgactacctccaatataactgctgctattgat
gtagcctttgttgaccgagctgatattaaagcatatgtggggcctccaacgcttcaggca
cgctatgaaattctaagatccagtttgcaggagctactacgaactggaataatcttgtca
aaccctgacatgcaggatggccataacgtcattctttcaaattttactggtttaaaagag
aagttgaattccacggtgctaccagaatctcaatcctcattaagtctttgtagaaaattg
ctcgaagctgcagaagcatgtgagggattgagtgggaggtccctcagaaagcttccattt
ttggcacatgcagcccttgccaatccatacagttgcgatccattcaggtttttgattact
ttgacagaaacagctaggcgggaaagtgcagagatgcctgactga
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integrated database retrieval system
