KEGG   Coffea arabica (coffee): 113739456
Entry
113739456         CDS       T11342                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
carb  Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:carb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:carb03009]
    113739456
Ribosome biogenesis [BR:carb03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    113739456
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WD40_Prp19 Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_WDR3_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_EML Beta-prop_Vps41 ASA1 NBCH_WD40 PAC11 Beta-prop_VPS8 WDR54 Beta-prop_WDR41 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd DSE1_N Beta-prop_IFT140_1st ANAPC4_WD40 Beta-prop_LRRK2 CFAP251_N Beta-prop_IP5PC_F WD40_MABP1-WDR62_2nd WD40_RFWD3 Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 TRM82_WD Beta-prop_WDR19_1st WDR90_beta-prop_4th WD40_Gbeta Beta-prop_SCAP Beta-prop_ACSF4 Beta-prop_NOL10_N Beta-prop_NWD2_C Invasin_D3
Other DBs
NCBI-GeneID: 113739456
NCBI-ProteinID: XP_027122475
UniProt: A0A6P6X4A2
LinkDB
Position
4c
AA seq 463 aa
MRSLCDCRVIKRDNMDCKEALAVCSDKNISIGITIWDLENGDRLLHIPTCSSPPHGLISL
RNQYLVASQVQRTGSVSGGVIFSWPLSKHQATLRSYLLESTGPLSCTRDGTFLACGATSG
NIHVWEVTSGRLLKNWSAHHTSICCMVLSSDDSFLISGSADGSIAVWSMISLLAEGNCDC
LTSIVSMSKDHTGAITGLLPASTNSSSNFISSSLDGTCKVWNMLSGNLIKTKAFPLPITA
IVLDLLEEILFCGSDNGAIFLNKFDAGLLNDPFSSPCGEQIVLNGHQKSITALTSCKAGL
VSASDDCTVCLWDTVNYTIIRRFNHFKGPISNLVAISKSSLIPKNNHRTSQFRVCVLDKN
SQPTNFAKETVTLLPSSTAQEETDAMSGCRSTNLLEKHILDLERERTLDALQMRVETNRE
NQMWAIKMTKHTMEMNQCLQSAYLDLLHDRLLQPHDSRLKMEK
NT seq 1392 nt   +upstreamnt  +downstreamnt
atgagaagtctatgtgattgccgagtgataaagagagacaacatggattgcaaggaggca
ttggcagtgtgcagtgataagaacattagcataggaataacaatttgggacctagaaaat
ggtgatcgtcttctccacataccaacttgttcttcacctcctcatggcctcatttctttg
agaaaccaatatcttgtggcttctcaggttcaaagaactggctcggtcagtggtggggtc
attttcagttggcccttaagtaagcatcaagccactttaaggagctatctactggaatcc
accggacccctatcctgcacaagggatggaacatttctggcttgtggagctacttctgga
aacatacacgtttgggaggttacttctgggaggctactgaagaactggtcagcacatcac
acctcaatatgctgtatggttctttctagcgatgattcctttcttatctccggttcagcg
gatggaagtattgctgtttggtccatgattagtttgctggctgagggcaattgtgattgc
ttaacgtcaattgtgagtatgtccaaagaccacacgggagctataactggcctattgcct
gcatccaccaactccagttctaattttatctccagctccctcgatggaacctgcaaggtg
tggaatatgttgtcagggaatcttataaaaacgaaagcttttccattgccaataactgca
attgttcttgatcttcttgaagaaattttgttctgtggaagtgacaatggggcaattttc
ttgaacaaatttgatgctggacttctaaatgatcccttttccagcccatgtggtgaacaa
attgtgctaaatggacaccaaaaatcaataactgcattgacatcttgcaaagcgggtctg
gtttctgcttctgatgactgtactgtttgcctctgggacacagtcaattataccattatt
agaagattcaaccactttaaagggccaatatctaatttggtggcaatcagcaagtcatct
ttaatacctaagaacaaccatagaacctctcaattccgcgtttgtgtgcttgacaagaat
tctcagcctaccaactttgccaaggaaacagttacgcttctgccttcaagcactgcccaa
gaagaaaccgatgccatgtcaggctgcagaagcacgaatttacttgagaagcacatactt
gatttagagagagagaggacgcttgatgctctacaaatgagagtagaaacgaatagagag
aatcagatgtgggctataaagatgacaaagcacacaatggagatgaaccagtgtcttcaa
tctgcgtatttggatttgctgcatgatcgattactacagcctcatgattcaagactgaag
atggaaaagtaa

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