Coffea arabica (coffee): 113739871
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Entry
113739871 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113739871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113739871
03009 Ribosome biogenesis [BR:
carb03009
]
113739871
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113739871
Spliceosome [BR:
carb03041
]
Complex A
U1 snRNP components
U1 related factors
113739871
Complex B
113739871
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
113739871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
113739871
NCBI-ProteinID:
XP_027123065
UniProt:
A0A6P6X5W4
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Position
4c:11209818..11216162
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AA seq
624 aa
AA seq
DB search
MFNPYDSRYTDAGSYRNRRSDIMGAAPPIVPPPMMGSGGLGPSYDRGGPPPRYGGPMGAP
PPVVDGGRGVGSGGGYGGLGDRRGDFRARGFDSGRSGGRSGGSGRGGSDAGRGGGMGFRG
GHGGGRGGFDGGRGGGSSGRGGRHGSRPRDDLDNLALPKQEFGNLVPFEKNFYVESPSVR
AMTEQEVAVYRARREMTVDGHDVPKPIRMFHEANFPDYCLEVIARLGFVEPTPIQSQGWP
MALKGRDLIGIAETGSGKTLAYMLPALVHVSAQPRLAQGDGPIVLVLAPTRELAVQIQEE
AMKFGSRIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLKRVTYLVLD
EADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVEALARQFLRNPYKVIIGSPELK
ANQSIRQIIEIVTDVEKYNRLIRLLKEVMDGSRILIFVETKKGCDQVTRQLRMDGWPALS
IHGDKSQDERDWVLADFKSGRNPIMIATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIG
RTGRAGATGTAFTFFTHANAKFARDLIKILRDAGQIIPPDLSAMARSTGSTMGGNNFRSR
GRGGFGNRGISGSNTIPLGAKKPW
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatccttacgattccagatatactgatgctggctcttatcgtaaccgtcgcagt
gatattatgggggcagcgcctccaattgttccaccgcctatgatgggtagtggaggttta
ggcccgagttatgaccgtggtgggcctcctcctcggtatggtgggcctatgggggcaccg
ccacctgtggtggatggtggtagaggggtcggcagtggtggtggctatggtggtttagga
gatagaaggggtgattttagagctagggggtttgattcgggacgtagtggaggtaggagt
ggtggcagtggaaggggtggttccgatgctgggaggggtggtggaatgggttttcgaggt
gggcatgggggaggaaggggtggttttgatggaggacggggtggtggtagtagtggaaga
ggtggtagacatggtagtaggccaagagatgacctagataatcttgctcttccaaagcaa
gaatttgggaacttggttccttttgagaagaacttttatgttgagagtccttcagtgagg
gcaatgaccgagcaagaggttgcagtttatcgtgccagacgggagatgactgttgatggc
catgatgttccaaagccaataaggatgtttcatgaggcaaactttcctgattattgcctt
gaggtgattgctagattaggttttgttgagcccacacctattcagtctcaaggttggccc
atggccttgaaaggtagagatcttataggcattgctgagactggttctgggaagactttg
gcttatatgttgcctgctttggtacatgtcagtgcgcagccgcgactggcacaaggagac
ggtcccattgtgctagtactagcacctacaagagaattggctgttcagatccaagaagaa
gcaatgaaatttggatcccgtataagaagtacttgcatctatggtggtgccccaaaagga
ccacaaatccgtgatcttaaaagaggagttgaaattgttattgccactccgggtagattg
atagatatgctggaggctcaacatacaaatttgaaaagagtaacttacctcgtactagat
gaggctgatcgaatgcttgatatgggatttgagcctcaaattaggaaaattgtttcacag
attagaccagatagacaaactttgtattggagtgccacatggccaagggaggtagaagct
ttagcaaggcagtttttgcgcaatccttacaaggtgatcattggttctccagaactgaaa
gcaaatcaatctatacggcagatcattgaaatagtgacagatgtggagaagtacaatagg
ctgattaggctgctgaaagaagtgatggacggaagtcgtattcttatatttgtggagaca
aagaaaggatgtgatcaagtgacaagacaattgagaatggatggatggccagccttatcc
atccatggtgataaaagccaggatgaaagggactgggtactggctgattttaaaagtggc
agaaatcctataatgattgccactgatgttgctgcacgtggtcttgatgtcaaggacata
aaatgtgtggttaactatgattttccatcaagcctcgaggattacgttcataggattggc
cgaactggtcgtgcaggagctacaggaactgctttcacctttttcactcatgcaaatgcc
aagtttgccagagatctaatcaagatattacgggatgcaggccaaatcattcctcctgat
ttgtctgcgatggccaggtctactggttctactatgggaggaaacaactttcgctccaga
ggacgtgggggttttggcaacagaggtatctctggatcgaacacaatacctcttggtgct
aagaagccatggtag
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