Coffea arabica (coffee): 113740157
Help
Entry
113740157 CDS
T11342
Name
(RefSeq) autophagy-related protein 16 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
carb Coffea arabica (coffee)
Pathway
carb04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
113740157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
carb04131
]
113740157
03029 Mitochondrial biogenesis [BR:
carb03029
]
113740157
Membrane trafficking [BR:
carb04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
113740157
Others
Specific organelles associated proteins
Auto phagosome
113740157
Mitochondrial biogenesis [BR:
carb03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
113740157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
EIF3I
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
ATG16
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_VPS8
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_SPT8
Beta-prop_WDR41
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_ACSF4
WD40_RFWD3
Beta-prop_Nup120_160
eIF2A
Beta-prop_HPS5
Cytochrom_D1
Beta-prop_EIPR1
WDR54
Beta-prop_Vps41
Beta-prop_RIG_1st
INO80E
Motif
Other DBs
NCBI-GeneID:
113740157
NCBI-ProteinID:
XP_027123471
UniProt:
A0A6P6X992
LinkDB
All DBs
Position
4c:complement(9870591..9873953)
Genome browser
AA seq
587 aa
AA seq
DB search
MKIVQSTIRVSRLRSMPQQPVWVGGWLQHSSALLPFTFPFLSLFQIHKQKSQNFNSDSFC
SRQQKQRVHPLQQKMALQEEEIKIAKEAIKHAIKALRRRHLVEEAAHSPAFIALSKPLLS
QGSEWKEKAENLEVELQQCYKAQARLSEQLVVEVAESRTFKTAIQEKDAIIADLQSEVAK
ARDECSDLNTLLEEKTKALELMISENQVLKTQLEEAKARADKFEAENKMLIDRWMLQKMQ
DAERLNEANAIYGDMLDQVNNSSIEQLARQQVDGVVRRSEEGAEYYVESSIPNMCKQRIP
GHEGGCGTIVFEYNSTKLISGGQDRDVKMWDTNTGALVRTFEGCVGSVLDLSITPDNRTI
IAASGSKNLVVWDASSARTRHTLTGHMEKVVAVDVSKISSRHVVSAAYDRTIKVWDLQKG
YCINTILFPSNCNALTFSIDGQTICSGHVDGNLRLWDIQTGKLLSEVAAHSLAVTSLSLS
RNGNTILTSGRDNLHNLFDMRTLEVCGTFRANGNRVASNWSRSCLSSDDNYVAAGSVDGS
VHIWSISNAKIVSTLKEHTTSVLCCSWSGFGKPLATSDKNGSICVWT
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaagattgtgcaatcaactattcgagtctcgaggttaagatcgatgcctcaacagcca
gtgtgggtgggtggctggctgcagcattcctccgcacttctccccttcacttttcctttt
ctttccctattccaaattcacaagcaaaaatcacaaaatttcaactcagattcattttgc
tcaagacaacaaaaacaaagggtccatcccctccagcaaaaaatggctttgcaagaggag
gaaataaagatagcgaaggaagcaatcaagcatgctatcaaagcccttcgaagaaggcat
ttggtggaagaagcagctcattccccggctttcatcgccctttctaagcctcttctttct
cagggctcagagtggaaagagaaagctgaaaatcttgaagtggaacttcagcagtgttat
aaagctcaggctcgattgtcagagcagcttgtggtggaagtggctgaatcaagaactttt
aaaactgcaattcaagagaaagatgccattatagctgatctacagagtgaggttgcaaaa
gcaagggatgaatgttcagatttgaatacactcttagaagaaaagactaaagctctagaa
ctcatgataagtgaaaatcaggttcttaaaacacaacttgaagaggcaaaagctagagcg
gacaagtttgaagcagagaataagatgctaattgatcgatggatgctgcagaagatgcag
gatgctgaacgccttaatgaggctaatgcaatatatggagatatgctagaccaggtgaat
aatagcagcatagaacagctggctcgtcaacaagtagatggtgtggtccgccgaagtgaa
gagggtgctgagtactatgtggagtcaagtattcccaatatgtgtaagcaacggatccct
ggacatgaaggtggctgtggtactatagtatttgagtacaactccaccaaattgattagt
ggagggcaggaccgagatgtgaaaatgtgggacacaaacactggtgcactggtgcgcact
tttgaaggttgtgtgggttctgttcttgatctttctatcacccctgataacagaaccatc
atagctgctagtggttcaaagaatttagttgtctgggatgcaagttcagccagaacacgc
catactctcacaggtcatatggagaaagtagttgctgtagatgttagtaaaatttcaagt
cgccatgttgtgagtgcagcttatgatcgtaccataaaagtttgggatctgcagaagggt
tactgtattaacacaattctcttccccagcaattgcaatgcgctgacttttagcatagat
ggacaaactatctgttcaggtcatgtagatggaaatcttcggctgtgggatatacaaact
ggtaaacttttgagtgaggttgcagcacattcacttgctgttacatcactgtctctatct
cgaaatggtaacacaatattgacaagtggcagagacaacttgcacaatttatttgacatg
cggacccttgaagtttgtggcacattcagagcaaatggcaacagagttgcatctaattgg
agcagatcctgtctcagttcagatgacaattatgttgctgctggatctgttgatggatct
gttcatatttggtcaatatcaaatgctaaaattgtaagcactctaaaggaacatacaact
tcagttctttgttgttcatggagtggctttggaaaaccactagcaacatctgataagaat
ggttctatctgtgtatggacatga
DBGET
integrated database retrieval system
