Coffea arabica (coffee): 113740270
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Entry
113740270 CDS
T11342
Name
(RefSeq) RNA-dependent RNA polymerase 2-like
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
carb03036
]
113740270
Enzymes [BR:
carb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
113740270
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
113740270
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RdRP
PH_RDR2
RdRP_head
RRM_RdRP1_2
RdRP_helical
RDR6_2nd
RRM_1
Motif
Other DBs
NCBI-GeneID:
113740270
NCBI-ProteinID:
XP_027123633
UniProt:
A0A6P6X7A9
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Position
4c:complement(15235464..15242614)
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AA seq
1120 aa
AA seq
DB search
MAVEERTTATVRVQNIPQSANAKDLLAFFQSTIGEDTVFAIEIFSEHKNWKSRGHGKVQF
ETLEAKIKCLSLSEKGKLFFKGSHLRLSHSIDEVIFRPVDSKLRIKNGVLRTGILLRNDC
MSVLERWDGVKVWIMPERNILEFWLSHGGECYKLEVQFGDVLESCGCCLDDQNPNAVLLK
LKHAPKIYQKLSGPNVAAKFSADRYHTCKEDFDFIWVRTTDFSSIKSIGYSSSLCLEIEE
GLSGLDLFTNLPYCSRFFLELTLEEGEQFSTTSELVPLVKCCSDIKITYEILFQLNSLVH
TQKLSLGAVNSELMEVLSGLDMDIAMPILQKMHKLETMCYDPVSFINKRLHVMGENASNL
RSSSYGRPKNNNMMTCHRVLVTPSKVYCLGPELETSNYIVKNFASYASDFLRVTFVEEDW
GKLSPSVVNTSFGRGLFAKNYKTNIYHRILSILKDGIVIGEKRFLFLAFSASQLRSNSVW
MFASNEILRAEDIRDWMGCFNKIRSVSKCAARMGQLFSSSLQTLEVPPQQVEVIPDIEMT
TDGENYCFSDGIGKISQGFARQVAQKCGLNYTPSAFQIRYGGYKGVIAVDRYSFRKLSLR
SSMLKFESKNRMLNVTKWSEAMPCYLNREIITLLSTLGVEDQVFLAMQYEQLHLLDKMLT
HREAALDVLASMGVNETKSIVVRMLRQGFEPEIEPYLSMILQSHRENQLSDLRSRCRIFV
PKGRVLLGCLDETGILDYGQVYIRITMTKTELQIGEQCFFQKVDETTAIVKGKVVVTKNP
CLHPGDVRVLEAVYEFSLQERGMVDCILFPLKGVRPHPNECSGGDLDGDLYFVSWDENLI
PFQTVTPMDYIDRRKRIVDHDVTLEEIQSFFVDYMISDTLGTISTAHLIHADREPDKALS
PKCLQLATLHSMAVDFAKTGTPAEMPRFLKPREFPDFMERWDKPMYTSQGALGKLYRATI
ASRVPGKSSFVFSAKIVQDAYDDELLIDGYEYFLGTAQCHKEMYVDKISTLLTYYGAETE
EEILTGNLRNKSMYLQRDNRRYFELKDRILVAIKSLQKEARSWFESSCRAAEQMKLASAW
YHVTYHPTYSEGSAKCLGFPWIVGDILLDIKSMNSRKVCS
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggaagagagaaccacggcaacagtgagagtccagaacataccccaatcagcc
aatgccaaggacctcttagctttctttcaatcaacaatcggagaagatacagtctttgct
attgaaatcttctcagagcacaaaaattggaagtccagaggtcatgggaaagtccagttt
gagacccttgaagccaagatcaaatgtctatctttatcagaaaaaggaaagcttttcttc
aaagggtctcatctgaggttatcacattcaattgatgaggtgatcttcaggccggttgac
tccaagcttaggattaagaatggggttttgcgtacggggattttgctgagaaatgattgc
atgtctgttttggagaggtgggatggtgttaaagtttggattatgcctgaaaggaatatt
cttgagttttggttgagtcatggtggcgagtgttataagctggaagtacagtttggtgat
gtcttggagagctgtgggtgctgtttggatgaccagaatcccaatgcagttcttctaaag
cttaaacatgcgccaaaaatataccaaaaactttctggacccaatgttgctgcaaaattc
agtgctgataggtatcatacttgcaaggaggattttgacttcatctgggttcgtacaact
gacttttccagtataaagtcaattggatattcatcatcgctttgtttggaaattgaggaa
gggttgtcaggattggacttgttcaccaatctgccgtactgcagtaggtttttcttagaa
ctaactctggaagaaggagaacagttttccaccacatctgagctagttccactagtgaaa
tgttgttcagatatcaaaattacatatgagatccttttccagcttaattccctggttcat
acccaaaagcttagtcttggtgcagtcaacagtgagttgatggaggtgcttagtggttta
gacatggatattgcgatgccaattcttcagaaaatgcataagctggagactatgtgttat
gatcctgtgtcattcatcaacaagaggttacatgttatgggtgaaaatgctagcaatctt
cgttcatcatcttatggtcggccaaaaaataataacatgatgacttgtcatagagtgctt
gtaacaccatcaaaagtctactgcttgggtcctgaactggaaacctcaaactacatcgtg
aagaactttgcttcatatgcttcggatttcttgagagtaacttttgttgaagaagactgg
ggtaaactttctcctagtgttgtaaatacaagttttgggagaggtttgtttgccaagaat
tacaaaacaaacatctatcacagaatcttgtcaatcctcaaagatgggattgtcattggt
gagaaacgattccttttcctggccttttcagctagtcaactgcgctccaattcagtttgg
atgtttgcttctaatgaaattttgagagcagaggatataagagactggatgggctgcttc
aacaagatccgaagcgtgtcaaaatgtgctgcaagaatgggtcagcttttcagctcctct
ttgcaaactctagaagtaccacctcagcaagttgaggttattcctgatatagaaatgact
actgatggagagaactattgcttctcagatggtattggaaagatttcccaaggttttgct
agacaggttgcccaaaagtgtggattaaattataccccctcagcatttcaaatacgctat
ggaggctataaaggtgtgatagctgttgaccgatactccttcaggaagctttctttacgt
agtagtatgcttaaatttgaatcaaaaaacaggatgctaaatgtcaccaagtggagtgag
gccatgccttgctatctaaatcgggagattattacccttttgtctaccttgggtgtagag
gaccaagtttttctggcaatgcaatatgagcaactacatctgctggacaagatgttgaca
catcgagaggcagcattagatgttctagcaagcatgggtgtgaatgagacaaaaagcatt
gtagttagaatgttgcgtcaaggttttgagcctgaaatagagccttatctttcaatgata
cttcagtctcatcgtgaaaaccagctttctgatttaagaagcaggtgccgcatatttgtt
cccaagggtcgggtcctcctagggtgcctagatgaaacaggaattttggactatggacag
gtttatatccgtataaccatgactaagactgagttacaaattggtgaacagtgtttcttt
cagaaggtggatgagacaacagcgatagttaaagggaaggttgtagtgacgaagaacccg
tgtcttcacccaggggatgttagggtccttgaggctgtttatgagttctctttacaggaa
aggggtatggtggattgcattttatttcccttgaagggtgtaaggcctcatccaaatgaa
tgctctggaggtgatcttgatggtgacttgtattttgtgagctgggatgaaaatctcatc
ccctttcaaacagtgacacccatggattacattgatcgtagaaagcgtattgtggatcat
gatgtcaccttagaggaaattcaaagttttttcgttgattacatgatcagtgataccctg
ggcaccatctctactgctcatctgatacatgcagatcgtgaaccagataaagctttgagt
ccaaaatgtcttcagttagctacactgcattctatggctgttgattttgcaaaaacaggg
actccagctgagatgcctaggtttttgaaacctagagagtttccagattttatggaaagg
tgggacaaacctatgtatacgtcacaaggagctttgggtaaactttaccgtgccacgatt
gcatctagagttcctgggaagtcaagctttgttttctcagccaagattgtccaagacgct
tatgatgatgagcttctgattgacggttatgagtacttccttggaactgctcaatgtcac
aaagagatgtacgtggacaaaatcagcaccttgctgacctattatggagcagagactgaa
gaggagatactgactggaaacttgcgtaataagtcgatgtatttgcaacgggacaatagg
cgttactttgaattgaaagaccgcatcttagtggctatcaaaagcctgcagaaggaggct
agaagttggtttgagagcagttgcagagcagccgagcaaatgaaactggcatcagcatgg
tatcatgtcacctaccatccaacatattccgaaggaagtgctaagtgcttgggctttcca
tggattgtgggtgatattctgctggacattaagtcaatgaatagcagaaaggtttgttct
taa
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