KEGG   Coffea arabica (coffee): 113740279
Entry
113740279         CDS       T11342                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03082  ATP-dependent chromatin remodeling
carb03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    113740279
   03083 Polycomb repressive complex
    113740279
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:carb03036]
    113740279
Enzymes [BR:carb01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     113740279
Chromosome and associated proteins [BR:carb03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     113740279
   HDAC complexes
    Sin3A-HDAC complex
     113740279
    BRAF-HDAC complex
     113740279
    REST complex
     113740279
    SHIP complex
     113740279
    MiDAC complex
     113740279
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     113740279
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    113740279
  Chromatin remodeling factors
   NuRD complex
    113740279
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 113740279
NCBI-ProteinID: XP_027123643
UniProt: A0A6P6X7B9
LinkDB
Position
4c:11278982..11284558
AA seq 457 aa
MDSSDAGGASLPSGPDGTKRRVTYFYEPNIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHR
KMEINRPFPAKRDDIRRFHSQEYVDFLSSVTPVTVHDHTHSRHLKRFNVGEDCPVFDGLF
EFCQASAGGSIGAAVKLNRQDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVH
RRVLYIDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIKDLGVGQGKYYALNVP
LNDGMDDGSFRDLFRPVIQKVMEVYQPDAVVLQCGADSLAGDRLGCFNLSVKGHADCLRF
LRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGIEPDNKLPYNEYYEYFGPDYTLHVEP
SLMENKNSARDLERIRNMLLEQLTKLTHAPSVQFQTTPPITEAPEVAEQSMDQRPQPRIW
NGENYESDSDEDEKPRHRSINSNVTPMTDADMRDISD
NT seq 1374 nt   +upstreamnt  +downstreamnt
atggactcctccgacgccggcggtgcctctctgccttcaggtcccgacggaactaagcgg
cgcgtgacatatttctacgagccgaacataggcgactactactatggacaaggccacccc
atgaaaccccaccgcattcgcatggcccacaatctcatcgtccactactctcttcaccgg
aaaatggaaatcaaccgccccttcccggccaagcgagacgacatccgccgcttccactcg
caggagtacgtcgacttcctctccagtgttacgccggtcactgttcacgaccatacccac
tcgcgtcatctcaagaggttcaatgtcggcgaggactgccctgttttcgacgggcttttt
gagttttgtcaagcatccgccggcggatcgattggcgccgccgttaaactcaaccggcaa
gatgctgatatagccatcaattgggctggtggacttcatcatgctaagaaaagtgaggct
tctggtttttgttatgtcaatgacattgttcttggcatcctcgagctcctcaaagtccac
aggcgtgtattatatatagatattgacatccaccatggagatggtgttgaggaggcattt
ttcaccactgacagagtaatgactgtgtctttccataaatttggggactttttccctggt
acggggcacattaaagatcttggggtgggtcaggggaagtactatgcccttaatgtccca
ttaaatgatggaatggatgatgggagtttccgtgatttattccgtcctgtcatccaaaag
gttatggaggtctatcagcccgatgcagttgttcttcaatgtggagcagattccctggct
ggcgacaggttgggttgcttcaacttatccgttaaaggtcatgcagactgcctacgtttc
cttagatctttcaatgtccctttaatggttctaggtgggggaggttatacaattcgcaat
gttgcacgctgctggtgctatgagacagcagttgcagttggcatagaacctgataataaa
ttaccttacaatgagtattacgagtactttggcccagattacactcttcatgtggaacca
agcctcatggagaacaaaaattcagcccgggatttggaaagaatcaggaatatgttactt
gagcagcttacgaaattgactcatgcaccaagtgtacaattccaaacaacacctcccatt
acagaagctccggaagtggctgagcaaagcatggatcaaaggccacaacctcggatctgg
aatggtgaaaattatgaatctgatagtgatgaagatgaaaagcctcgacaccgtagtata
aatagcaatgttacaccaatgacagatgctgacatgagggatatatctgattaa

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