KEGG   Coffea arabica (coffee): 113740342
Entry
113740342         CDS       T11342                                 
Name
(RefSeq) probable splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
carb  Coffea arabica (coffee)
Pathway
carb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113740342
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:carb03041]
    113740342
Spliceosome [BR:carb03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    113740342
 Complex B
    113740342
 Complex C
   U2 SnRNP specific factors
    113740342
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin
Other DBs
NCBI-GeneID: 113740342
NCBI-ProteinID: XP_027123745
UniProt: A0A6P6X7R9
LinkDB
Position
4c:50625599..50630201
AA seq 812 aa
MLGNLPILPLPAPPSDGNLGPLPLAQITEEDEKQNGSQEDLSKADKSNSAPISVATHTRT
IGIIYPPPDIRNIVDKTSQFVAKNGPEFEKRIIASNAGNPKFNFLNASDPYHAYYQHRLS
EARAQNQVSALQPLQLADSAAPESAAAAPAADGKDAIAKPDPSVQFRPVRKILEPPEAEQ
YTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFLFLKPTHSMFMFFTS
LADAYSKVLMPPKALTDKLRKSVTDMTTVLERCLHRLEWERSQEQARQKAEDEIEQERLH
MAMIDWHDFVVVETIDFADDEDEDLPPPMTLEEVIRRSKMTGMEEEEIIEPGKEVEMEMD
EEEVQLVEEGMRAASLEENGDLKNNEAKVTIDEAEPPMRIVKNWKRPEERLPAERDPTKF
VVSPITGELIPDNEMSEHIRISLIDPKYKEQKERMFAKIRDTTLAPDDEITKNIVGLART
RPDIFGTTEEEVSNAVKAEIEKKKDDQPKQVIWDGHTGSIGRTASQAMSQNAGGEDLNEA
GNSDMRNLPGPAAPPPPRPGMPSIRPLPPPPGLALNIPRPPNTVQYSTPTGPGVLAPPPP
RPPVVGVLPRPAPHPMSMMPGQQPLMVNRPQMHPSMSMNSPNMPVPPPPGSQFTHLSAPR
PFVPLSMSQPGLPMVPPPSMPQGMPPPPPEEAPPPLPEEPEPKRQKLDDALLVPEDQFLA
QHSGPARINVSVPNHDEGNMKGQVLEILVQSLSETVSSLKEKIAGEIQLPANKQKLSGRP
GFLKDNLSLAYYNVAPGETLQLSLRERGGRKR
NT seq 2439 nt   +upstreamnt  +downstreamnt
atgttgggcaatttgccgatattgcctttacctgcacccccttctgatggtaatcttggg
cctttaccactagctcagataactgaagaagacgagaaacagaatggaagtcaagaggat
ctgagcaaagctgacaaatccaactcagctcctatttcggttgcgactcatacgagaact
attggtattatttatcctcctccagatatcagaaacattgttgacaagacatctcagttt
gtggccaagaatggtcctgagtttgaaaagaggattatcgctagcaatgctgggaatcca
aaatttaactttttgaatgcctctgatccataccatgcatactatcagcatcgtttatct
gaagctcgtgcacaaaatcaggtttctgctctgcagccattgcaactggcagattcagct
gctcctgagtctgcagctgctgccccggctgctgatggcaaggatgcgattgcaaagcct
gatccgtcggtgcagtttaggcctgttcgtaaaattcttgaaccccctgaagcagagcag
tacactgttcgtctccctgaagggattacaggggaggagttggacataattaagcttact
gcccagtttgtcgcaaggaatgggaaatcatttttgactggattgaccagtagggagatt
aacaatcctcaatttctttttctaaaaccaacccatagcatgtttatgttttttacatct
cttgcggatgcttattcgaaagtattgatgcctccaaaagcattaacagataagttgaga
aagagtgtaactgacatgactacggtgcttgaaagatgccttcatcgcttggagtgggaa
cggtcgcaggagcaggctaggcagaaagctgaagatgagatagaacaggagcgattacat
atggccatgattgattggcatgactttgttgtagtagagaccatagactttgcagatgat
gaggatgaagatttgccccctcctatgaccctggaggaggttatacgaagaagcaagatg
acaggtatggaagaagaggagatcattgagcctgggaaggaagtagaaatggaaatggat
gaagaggaggtgcagcttgttgaggagggcatgagggcagctagtcttgaagagaacggg
gacctgaagaataatgaagctaaggttacaatagatgaagcagaaccacctatgaggata
gtaaagaattggaagagacctgaggagaggttacctgctgaaagagatccaactaaattt
gttgtgtctccaataactggtgagctgattcctgacaatgagatgtctgaacatatcagg
atctctttaattgatccaaagtacaaggagcagaaggagaggatgtttgcaaaaattagg
gatacaactcttgctcctgatgatgagatcacaaaaaatattgttggacttgctcgaacc
cgtcctgatatttttggtaccactgaggaggaagtctctaatgctgttaaggcagagatc
gagaagaaaaaagatgatcaaccaaagcaagtcatttgggatgggcatacaggaagtatt
ggtcgtacagcaagtcaggccatgtctcagaatgctggtggagaagatctaaatgaagca
ggcaacagtgatatgagaaatcttccaggtcctgcagctcctcctcctcccagacctggc
atgccatcaattagacctcttcctccacctcctggacttgccttgaatatccctaggcct
cctaatactgttcagtattcaaccccaactggtcccggtgttttggctccacctccacct
aggcctccagtcgtcggtgttctgcctagacctgcacctcatccgatgtcaatgatgccg
ggccagcaacctctgatggtaaatcgaccccaaatgcatccgtccatgtccatgaattcc
cccaacatgcctgtgccaccgccacctggatctcaatttacacatttgtctgctccccgg
ccttttgttcccctttccatgtctcagcctggcctgcctatggtcccaccgccatccatg
cctcagggaatgccaccacctccacctgaggaagctcctccaccacttcctgaagaacca
gaaccaaaaagacagaaacttgatgatgctctgcttgttcccgaggatcaatttttagct
caacattcgggacctgctcgtatcaacgtgtctgtgcccaatcatgatgaaggcaatatg
aaagggcaggtgctggagattcttgtgcagtcgctgtctgaaactgtcagcagcttgaaa
gagaaaatagctggtgagattcaacttccggctaacaaacagaaactgagtggaaggcct
ggttttctcaaggacaatttgtcgctcgcatattataacgttgcacccggagaaacactt
caactctctctcagagagcgtggaggaagaaagagatga

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