Coffea arabica (coffee): 113740771
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Entry
113740771 CDS
T11342
Name
(RefSeq) vacuolar sorting protein 18-like isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
carb Coffea arabica (coffee)
Pathway
carb04142
Lysosome biogenesis
carb04145
Phagocytosis
carb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
113740771
04142 Lysosome biogenesis
113740771
04148 Efferocytosis
113740771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
carb04131
]
113740771
Membrane trafficking [BR:
carb04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
113740771
Hops complex
113740771
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
Clathrin
VPS18_RING_C
zf_RING_Vps8
zf-RING_11
zf-RING_Vps41
zf-rbx1
zf_RING_Vps8_fungal
RPN1_RPN2_N
zf-RING_UBOX
Nup54_57_C
zf-C3HC4
zf-RING_2
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
113740771
NCBI-ProteinID:
XP_071903756
UniProt:
A0ABM4U8Z6
LinkDB
All DBs
Position
4e:11749483..11764522
Genome browser
AA seq
989 aa
AA seq
DB search
MEQKRQVFSVDLLERYAAKGRGVITCMAAGNDVIVLGTSKGWIIRHDFGVGDSYDIDLSA
GRPGDQSIHRVFVDPGGSHCIATIVGPGGADTFYTHAKWTRPRLLSKLKGLIVNAVAWNR
QLITEASTREVILGTDNGQLHEIAVDEKDKREKYIKFLFELKELPEAFTGLQMETANVIN
GTRYYVMAVTPTRLYSYTGIGSLESVFASYVDRTVHFTELPGDIANSELHFFINQRRAVY
FAWLSGAGIYHGGLNFGAQHSSPDGDQNFVENKALLSYSRLGEGTEAVKPSSMAVSEFHF
LLLIGNKVKVVNRISEQIVEELYFDQASDAASRGIIGLCSDASAGLFYAYDQNSIFQVSV
NDEGRDMWKVYLDLKEYAAALANCRDALQKDQVYLVQAEAAFSTKDFLRAASFYAKINYV
LSFEEISLKFISMGEQDALRTFLLRKLDNLAKDDTCQITMISTWITELYLDKINRVLLED
EGASEKGALEYQSIIKEFRAFLSDSKDVLDEATTMKLLKSYGRVDELVFFANLKEQHEIV
VHHYIQQGEAKKALQVLQKPNVPIDLQYKFAPDLIMLDAYETVESWMTTKDLNPRKLIPA
MMRYSSEPHAKNETHEVIKYLEYSVHRLQNEDPGVHNLLLSLYAKQEDESSLLRFLQCKF
GKGRSSGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEAD
KVEDDEELRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNEQIENLKQEMNDATHGADNIRNDISALAQRYAVIDRDEECGVCR
KKILNVGRDYQMSWGYTSAGSMAPFYVFPCGHAFHAQCLITHVTGCTSQMQAEYILDLQK
RLTLLSNEPRKDSSGGLSEEEPLTSMTPLEKIRSQLDDAIASECPFCGDLMIREISLPFI
LPEEADVAASWEIKPHNAGMQKSLSLPAY
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaagcggcaggtattttcagtagatcttctagaaagatatgctgccaaggga
cgtggagtgattacgtgtatggctgctgggaatgacgtcattgtcttaggaacaagtaaa
ggctggatcatcagacacgatttcggagttggggattcctatgatattgatctttcagct
ggtcgacctggagatcaatccatccatcgagtgtttgttgaccctggtgggagccattgc
attgccaccatagttggtcctggaggtgctgatacattttatacacatgcaaagtggacc
agacctcgtctactaagcaaattgaaaggtcttattgtaaatgctgttgcttggaataga
caattgataacagaagcttccactagggaagtcattctaggtacagataatgggcagctt
catgaaattgcagtagatgagaaagataaaagggagaagtatattaagtttttgtttgaa
ctaaaagagcttcctgaggctttcaccggcttgcagatggaaacagccaatgtaattaat
ggaactagatactatgtcatggctgttacacctacgaggctttattcttatacaggaatc
ggttcattagagtctgtgtttgctagctatgtggatcgaaccgttcatttcacggagttg
cctggtgacattgcaaacagtgaacttcacttttttataaaccaaaggagagctgtttac
ttcgcatggctttccggagccggaatctatcatggtggtttaaattttggtgcgcaacat
agttcacctgatggggatcaaaattttgtggagaataaggctcttttgagctattcaaga
ttaggtgaaggaactgaagctgtcaagcctagttctatggctgtgtctgaatttcatttt
cttcttctgattggaaacaaagtcaaggttgtcaatagaattagtgagcagatagtggag
gaactttattttgatcaagcatctgatgcggcttcaaggggtataattggattatgcagt
gatgcatctgctggactgttctatgcatatgaccagaactccatttttcaggtatctgtg
aatgatgaggggcgagacatgtggaaggtgtacttagacttaaaggaatatgctgcagct
ttggcaaattgtcgtgatgcactccagaaagaccaagtttatttagtgcaggctgaagct
gccttttccactaaggactttctcagagcagcatctttctacgcgaagattaattatgta
ttgtcgtttgaagagatcagtttgaagtttattagcatgggagagcaggatgctttgagg
acttttctactgcgcaagcttgataatcttgccaaggatgacacatgccaaataactatg
atttcaacttggattaccgaattatacttagacaagataaatagagtacttttggaggat
gaaggtgcttctgaaaaaggtgctttagagtaccaatcaattattaaggagtttcgtgct
tttctaagtgactccaaggatgtattagacgaggcaaccacgatgaagctattgaaaagc
tatggtagagttgatgaattggtattctttgctaatctgaaggagcaacatgagattgtg
gttcatcattacatccagcaaggagaagcaaagaaagcactacaagttcttcagaaacct
aatgttcctatagacctccagtacaagtttgctccagacctcattatgcttgatgcatat
gaaactgtcgaatcatggatgaccactaaagacctgaaccccagaaagctgattcctgcc
atgatgcgatattcaagtgaacctcatgctaagaatgaaacacatgaagtgatcaaatat
ttggagtattccgttcaccgtttgcagaatgaggaccctggtgttcacaatttgttactc
tctctgtatgccaagcaggaggatgagagttctcttctgcgttttctacagtgtaagttt
ggtaaaggacgatcaagtggccctgaatttttttatgatcccaagtatgcgttgcgcctt
tgtcttaaggaaaagagaatgcgtgcatgtgttcacatatatagcatgatgtccatgcat
gaagaagcggttgctctcgcactgcaggttgatccagagctagctatggctgaagctgac
aaagttgaagatgatgaagagttaaggaagaaactatggcttatggtggccaagcatgtc
atagagcaggaaaagggaacaaaaagggaaaatattcggaaggcaatagcttttctcaaa
gagacggacggactattaaagatagaggacatcttaccctttttcccagactttgctttg
attgatgacttcaaggaggcaatatgctcatccttggaggactacaatgaacaaattgaa
aatttgaagcaggagatgaatgatgcaactcatggtgctgataatatacggaatgatata
agtgcacttgctcaacggtatgcagtcatagatcgtgatgaggaatgtggggtttgcaga
aagaaaatcttgaatgtaggtcgggactatcagatgtcttggggttacacatcagctgga
tctatggcccctttctatgtctttccttgtggacatgcatttcatgctcagtgcttgatt
actcatgtgactggttgcactagtcaaatgcaagcggaatatatattggatctgcaaaag
cgacttacattactaagtaatgaaccccggaaggactcaagtggtggattgtccgaagag
gaaccattaacaagcatgactcctttagaaaagatccgatcacaactggatgatgctata
gccagtgaatgcccattttgtggtgacctaatgatccgggagatatctttgcctttcatt
cttcctgaggaggcagatgtagcagcatcatgggagatcaaaccgcataatgctggaatg
cagaagagtctttccctaccagcatattag
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integrated database retrieval system
