Coffea arabica (coffee): 113741581
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Entry
113741581 CDS
T11342
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
carb Coffea arabica (coffee)
Pathway
carb03030
DNA replication
carb03420
Nucleotide excision repair
carb03430
Mismatch repair
carb03440
Homologous recombination
carb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113741581
03420 Nucleotide excision repair
113741581
03430 Mismatch repair
113741581
03440 Homologous recombination
113741581
03460 Fanconi anemia pathway
113741581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
carb03000
]
113741581
03032 DNA replication proteins [BR:
carb03032
]
113741581
03400 DNA repair and recombination proteins [BR:
carb03400
]
113741581
Transcription factors [BR:
carb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
113741581
DNA replication proteins [BR:
carb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
113741581
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
113741581
MMR (mismatch excision repair)
113741581
DSBR (double strand breaks repair)
HR (homologous recombination)
113741581
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
PGAP1_3rd
Motif
Other DBs
NCBI-GeneID:
113741581
NCBI-ProteinID:
XP_027124934
UniProt:
A0A6P6XCA3
LinkDB
All DBs
Position
4e:complement(29681634..29685538)
Genome browser
AA seq
626 aa
AA seq
DB search
MAKTVSPEAISTILANPSPESSSDLPEIVVQVLDLKPTGNRYMFTASDGKMKLKAILQSG
LSSEVVSGNIQNLGLVRILDYTLNDIPTKNEKYLIVTRCEAVSPALDAEYKAEANNAEET
SIVLNPKEEVDVMKMEVKNGGPGIILKPKQEIVAKSAAQIVNEQNVNMAPAARMGMNRRI
YPLLSLNPYQGMWTIKVRVTSKGSVRTYKNARGEGCVFNIELTDEDGTQIQATMFNDAAR
KFYDKFALGKVYYISKGTLRVANKQFNTVKNDYEMNLNENSEVEEVSNEAAFIPETKYIF
VPIDELGPYVNGRELVDVIGVVQSVSPTVSIRRKSNNETIPKRDITIADETKKTVVISLW
NDLATTVGQELVDMADKSPVVAIKTLKVGDFQGVSLSTLSKSVVAINPEIPEAKKLRNWF
DSEGKETSLASVGAGLSPTTKGGARSMYSDRVFLSHIVSNSSLGEDKPVFFSIKAYVSYI
KPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKDDNECSLRYIMVVKVSDASDEAWLSVF
NEEAEKILGCSADELNKLKTEEGETSYQMKLKEATWVPHLFRVSVTPHEYNNDRRQRITV
RAIVPLDYAAESRYLMEEISKMKISQ
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaacggtgagtcctgaagcgatttccaccattttagccaacccatcaccggag
tcttcctctgatctacccgaaatcgtggtccaagttctggatctcaagcccactggcaat
cgatatatgttcacagccagtgatgggaaaatgaagctcaaggccattctgcaatctggt
ttgtcgtctgaagttgtatcagggaatattcagaatttaggccttgtgcgaattcttgat
tatacactcaatgacatcccaaccaagaatgaaaaatacttgattgtaacgagatgtgag
gcagtgtctccagcacttgatgctgaatacaaggctgaggctaataatgctgaagaaact
agcattgtcttgaatccaaaggaggaagttgatgttatgaaaatggaagtgaagaatgga
gggcctggcatcattttaaagcctaagcaagaaattgttgccaaatcggctgctcagatt
gtgaatgaacagaatgtaaatatggcacctgctgctcgaatgggaatgaacagaagaatt
tatccacttctttcattgaatccttatcaaggaatgtggacaattaaggtccgtgttact
tccaaggggagtgtgcgaacttacaaaaatgccagaggtgaagggtgtgtgttcaatata
gagttaacagatgaagatggtacacaaatacaagccacaatgttcaatgatgctgcaagg
aagttctacgataagtttgcattgggaaaggtttattacatatcaaagggaactcttaga
gttgctaacaagcaattcaatactgtaaaaaatgattatgagatgaacttgaatgaaaat
tctgaagtggaggaggtgagcaacgaagcagcttttattcctgaaacaaagtacattttt
gtcccaattgatgaattgggtccctatgtcaatgggagggagcttgttgacgttattggt
gtagttcaaagtgtgtctcctactgtgagcattaggaggaaaagtaacaatgagaccatc
ccaaaacgtgacataactattgcagatgaaacgaagaagactgttgtgatttctttatgg
aatgatctggccaccactgttggacaagaattggtggatatggctgataaatctccagta
gttgcaatcaagacccttaaagttggagattttcaaggtgtctctttgtcaactttgagc
aaaagcgttgtagcaattaatcctgaaatacctgaagcaaagaagttgaggaactggttt
gattctgaaggcaaagaaacttcactagcctctgttggtgctggtttgagtcccactacc
aaaggtggagcaagatccatgtactctgaccgagtctttctgtctcatattgtcagtaat
tcatctttgggagaggacaagcctgtctttttcagcataaaggcatatgtgagttacatc
aagccagatcaaacaatgtggtatagggcatgcaagacatgtaacaagaaagtaacagaa
gctattgggtctggctactggtgtgagggatgccagaaggatgataatgagtgcagtttg
agatatataatggtagttaaggtatctgatgcaagtgatgaggcctggctctctgttttc
aatgaagaagcagagaaaatacttggatgctctgcagatgagcttaataagttaaaaact
gaggaaggggaaacatcttaccaaatgaaattgaaggaagctacatgggtgcctcacctt
ttccgagttagtgtcacaccacatgaatacaataatgataggaggcagaggataacagtc
agagctattgttcctcttgattatgcagcagaatccagatatttgatggaagaaatatca
aaaatgaaaatctctcagtag
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